RNA id: CI01000072_04197826_04201434.mRNA


Basic Information

Item Value
RNA id CI01000072_04197826_04201434.mRNA
length 612
RNA type mRNA
GC content 0.52
exon number 4
gene id CI01000072_04197826_04201434
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 4197826 ~ 4201434 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCCTTCTCGCCTACTGGGTGCATCAAAGGAATGAAGCCAAGGGATGTGAAAAACAAGGGAGATAAGGGTCCAGTTCCCTGTCCCAGAGGAACATTTGGACCAAGTTTCTGGGCCACGACCATAAACGGCTGTATCAGCTGCCCATCACATCACTATGGACCTAGAGAAGGCTTGAGCAGTTGCCTGCCTTGTGGGCCCTGGTCACAACAGCCTCTGCCTGGACAGGACAGCTGTACATGTCTGCGAGAGGGTCAAGTCTTCCAGGTCAGTGATGGACAGTGTCCATGTACTTTGGGATACACACAGAAAGGAGAAGCCTGTGTGTTGAAGGTCTATGAGATCTGCAAGGATGGAAGAGTACGTAATCAGCATGGAGAATGTCTTGACCACAAACAATGGAAGCAGTATTGCTCCCAGCAGGTGTGTCCATTTCCTGAGCTGTACGAGGGCTACGATGGCTCCCTGGGTCTGTGTGTGTGCAGAGGTCTATCCAGGCCTGAGCCAGACAGGGTTGAGTGTGTGGGCTGGTGCCGGAACACCCTGAGTCCAGTTCTGCAGCTGATTTGCACTGGAAGCCTTTACCTGCTCTACACAGAGTCTAATCAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325213 lncRNA downstream 104501 4093110 ~ 4093325 (-) True G286880
TU325210 lncRNA downstream 116613 4080982 ~ 4081213 (-) True G286877
TU325207 lncRNA downstream 130031 4067593 ~ 4067795 (-) True G286874
TU325206 lncRNA downstream 130652 4066936 ~ 4067174 (-) True G286873
TU325196 lncRNA downstream 133410 4060759 ~ 4064416 (-) True G286867
TU325218 lncRNA upstream 67588 4269022 ~ 4270014 (-) True G286883
TU325274 lncRNA upstream 75126 4276560 ~ 4276869 (-) True G286936
TU325275 lncRNA upstream 75569 4277003 ~ 4277262 (-) True G286937
TU325278 lncRNA upstream 103865 4305299 ~ 4305518 (-) True G286940
TU325283 lncRNA upstream 108244 4309678 ~ 4309912 (-) True G286945
CI01000072_04191370_04195085.mRNA mRNA downstream 2741 4191370 ~ 4195085 (-) True CI01000072_04191370_04195085
CI01000072_04156907_04167270.mRNA mRNA downstream 30556 4156907 ~ 4167270 (-) True CI01000072_04156907_04167270
CI01000072_04150260_04155131.mRNA mRNA downstream 40260 4150230 ~ 4157566 (-) True CI01000072_04150260_04155131
CI01000072_04125176_04131163.mRNA mRNA downstream 66378 4123558 ~ 4131448 (-) True CI01000072_04125176_04131163
CI01000072_03972493_03983836.mRNA mRNA downstream 213990 3972401 ~ 3983836 (-) False CI01000072_03972493_03983836
CI01000072_04207000_04210775.mRNA mRNA upstream 5527 4206961 ~ 4211078 (-) True CI01000072_04207000_04210775
CI01000072_04284927_04303593.mRNA mRNA upstream 82992 4284426 ~ 4303593 (-) True CI01000072_04284927_04303593
CI01000072_04315603_04316880.mRNA mRNA upstream 113477 4314911 ~ 4316880 (-) True CI01000072_04315603_04316880
CI01000072_04514012_04539785.mRNA mRNA upstream 311344 4512778 ~ 4539876 (-) False CI01000072_04514012_04539785
CI01000072_04577347_04600719.mRNA mRNA upstream 375615 4577049 ~ 4600719 (-) True CI01000072_04577347_04600719
TU324366 other downstream 221759 3970270 ~ 3976067 (-) False G286205
TU324361 other downstream 221824 3970270 ~ 3976002 (-) False G286205
TU324367 other downstream 221824 3970270 ~ 3976002 (-) False G286205
TU324368 other downstream 221824 3970270 ~ 3976002 (-) False G286205
TU324139 other downstream 1198331 2993769 ~ 2999495 (-) True G286005
TU325381 other upstream 184711 4386145 ~ 4394223 (-) True G287021
TU325650 other upstream 1179286 5380720 ~ 5382001 (-) True G287264

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00016969 True 5243 mRNA 0.54 28 NC_007126.7 21882419 ~ 21943563 (+)