RNA id: CI01000072_04315603_04316880.mRNA


Basic Information

Item Value
RNA id CI01000072_04315603_04316880.mRNA
length 1335
RNA type mRNA
GC content 0.41
exon number 5
gene id CI01000072_04315603_04316880
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 4314911 ~ 4316880 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTGATATCATGTCGAAGGTCTCTATGGGTAAAGTGCTGCTTCGAAATGTCATCAGACACACAGATGCCCATAACAAGATTCAAGAGGAGTCTGAGATGTGGAAATTGAGGGATCTTGAACGACAAACCACTTCCACTCATTTCCCAAAGAACAGGGGCCGCATGCATTGTGACCGCTATTTGGACGACTCTGAGGGGTCAATGCGAGACCGCCTTGGAGACAGGAGAGATGTGATGTCCGAGAGAGATGAGAGGGAGGCACGATACTGGACGAGAAAACTATATGAGTTTGAAGCCAATGATCCTGACAGTTATGTCTCCTCAGGTGGGGCCACAGTGGCTTTAAGGAGCTTTATCCAGAGGAATTTCATTCTGATGGAGACCTGCAGCGATGCGGAGGACACCGTGAGGAGGAAACAGAGGAGGAAGGGAGGTAAAAGCAAGCGTAGGAAAAAGGAACACAAAAACAAAGACAGAACAGAGGACAGCAGCACAGAGGACAGCCGATCAGACACAAGGACAAGAACGAAGAGGAAGAGAAACTGCCCTGAAACAGACAAGCTGAACGAGCCTCAGCGGAAAAAACGAAAAAACTGGAAAGTGGCGAATGAGGAGAGATCAGAGGAGAGCTCTGATGCTTGACTTTTCAGTCTACCTGGCTGCACAACTAGGCGGACTGTAGACACATATTTGTAATTGTGCATCTCATTCATATTTAGAAGACTCTGATAATGGGTCTGGAGTCAATAACTTGATCTTTATACCTCTCCAAACAGACACTTGATGCTTTTTCATCATGTTTGCATCCAAGAGAATTTCTCTAATTTTATGAGGTTATATTTTCTAAACATTTTAAATATCTTTGAATGTTTTTTTTTATTCCTTGTGTGACTGAACATTTTTTTATTGCCATTGTCAGAAAAAACTCAGGTATCTTTCTGTCATGTGTGAAACTTTTTTTTTTTTTTTTTTATAAATATACTTGTATTGTACTTGAACCTGCCAGTTACAACAATCCAATTGTTGTTGTTTTTGCCAAACAGCATTTGTGTAGACTGAATAGTTATGTCATATGGCAGTGGCCCAGAAGGTGGCACTGTTGTACTATCAGACGACAATCCCAAATCTAGCCTGCCTGATTGTCTTTTAACGACTTGTTTTGTACGTTCGCTTGTAAACACCTACAGTAAATGGTGTTTCGCTACTGTTTACTTCCGACATTTACGGATAATGGCTACTTCCCCTTGCTAATGTGTGTGCTTTCACTGATTCATTTGCACTAAACTACCAAAGGTCAAGCATTAATATCATATAAATGTAATTATATCATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325283 lncRNA downstream 4999 4309678 ~ 4309912 (-) True G286945
TU325278 lncRNA downstream 9393 4305299 ~ 4305518 (-) True G286940
TU325275 lncRNA downstream 37649 4277003 ~ 4277262 (-) True G286937
TU325274 lncRNA downstream 38042 4276560 ~ 4276869 (-) True G286936
TU325218 lncRNA downstream 44897 4269022 ~ 4270014 (-) True G286883
TU325286 lncRNA upstream 2676 4319556 ~ 4319768 (-) True G286948
TU325291 lncRNA upstream 15004 4331884 ~ 4338077 (-) True G286953
TU325383 lncRNA upstream 96657 4413537 ~ 4414351 (-) True G287023
TU325419 lncRNA upstream 103317 4420197 ~ 4420415 (-) True G287059
TU325420 lncRNA upstream 104456 4421336 ~ 4421849 (-) True G287060
CI01000072_04284927_04303593.mRNA mRNA downstream 11318 4284426 ~ 4303593 (-) True CI01000072_04284927_04303593
CI01000072_04207000_04210775.mRNA mRNA downstream 103833 4206961 ~ 4211078 (-) True CI01000072_04207000_04210775
CI01000072_04197826_04201434.mRNA mRNA downstream 113477 4197826 ~ 4201434 (-) True CI01000072_04197826_04201434
CI01000072_04191370_04195085.mRNA mRNA downstream 119826 4191370 ~ 4195085 (-) True CI01000072_04191370_04195085
CI01000072_04156907_04167270.mRNA mRNA downstream 147641 4156907 ~ 4167270 (-) True CI01000072_04156907_04167270
CI01000072_04514012_04539785.mRNA mRNA upstream 195898 4512778 ~ 4539876 (-) False CI01000072_04514012_04539785
CI01000072_04577347_04600719.mRNA mRNA upstream 260169 4577049 ~ 4600719 (-) True CI01000072_04577347_04600719
CI01000072_04602970_04610481.mRNA mRNA upstream 285969 4602849 ~ 4610481 (-) True CI01000072_04602970_04610481
CI01000072_04613981_04618187.mRNA mRNA upstream 296560 4613440 ~ 4618187 (-) True CI01000072_04613981_04618187
CI01000072_04796909_04805902.mRNA mRNA upstream 479900 4796780 ~ 4805902 (-) True CI01000072_04796909_04805902
TU324366 other downstream 338844 3970270 ~ 3976067 (-) False G286205
TU324361 other downstream 338909 3970270 ~ 3976002 (-) False G286205
TU324367 other downstream 338909 3970270 ~ 3976002 (-) False G286205
TU324368 other downstream 338909 3970270 ~ 3976002 (-) False G286205
TU324139 other downstream 1315416 2993769 ~ 2999495 (-) True G286005
TU325381 other upstream 69265 4386145 ~ 4394223 (-) True G287021
TU325650 other upstream 1063840 5380720 ~ 5382001 (-) True G287264

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00016962 True 5133 mRNA 0.38 5 NC_007126.7 21712328 ~ 21719970 (+)