RNA id: CI01000072_04796909_04805902.mRNA


Basic Information

Item Value
RNA id CI01000072_04796909_04805902.mRNA
length 2634
RNA type mRNA
GC content 0.51
exon number 9
gene id CI01000072_04796909_04805902
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 4796780 ~ 4805902 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAACTTGCAGAGGAAACAAAGAGAATTGGAGAGCCCATTTTGCTACAGAGACTGGACTGGATCTTTTCTGTTCCAGAAGTACAGAACTAACCTGGACCGGTGGCGTGGTAGGAGAGGGGGTTCGGTTTTGGTCGGTCCGTGCTCAGCTCAGAGTCTCAATCCAGCCGGGAAAAATGTCTGCCTCAGTATCAGCCCTCTGTGAGGGTGAAAGAGCCTGTCTGCACGATGAAGTGTGTGTTCACCCTGGATTTTGTCGATGTAAACCTGGATTTTACGGGTACCAGTGCAAAACCCGTTGTCCTTCTGAATTTTGGGGGGCGGATTGTCGTGAGCTTTGTCCCTGTCACCCTCATGGGCTCTGTGACCCAGTCACAGGTGAGTGCTCGTGCCTGCCTAACCGCTGGGGCAACCTGTGCCAAAACAGCTGCAAATGTACACGTCATGGGAAATGTGACCCTGTCTATGGCAACTGCACTTGTGAGGAGGGCTGGTGGACATCCACTTGCTCCAAAGTCTGTCAGTGCCACCTTGCTACATCCACCTGTGACCAAGCCACAGGCCGCTGCTTGTGTAACGAGGGCTACTGGGGCCAAAAGTGCAGCCTGCGATGCAACTGCTACGTGTCCCCCTGCCTGCAGCGCACAGGGGAGTGTCAGTGTCTGCACGGCTGGTGGGGTCCATCCTGTGACCGCCGTTGTAATTGTAATCTCAACCATGCCGACTGTGACTTGCAAACTGGCACCTGTTTGTGCTACCCGGGTTACAAAGGCTCTGTCTGCAATGAGCCTTGTGAGAGTGGAAAGTACGGCAGTGGCTGTAAGAAGAGCTGTGGACACTGTGAAGGGGGCAGGTCTTGCTCTAAACAGGACGGCCTGTGTGATGCTTGTGCACCAGGGTGGAATGGCACTCGCTGTGACCAGAGCTGTCCTGCAGGTTATTATGGCCATCACTGCCGAGAGGTTTGTCCGCATTGCAGAAATATGGACCCATGTGACCCTGAAACTGGAGAATGCTTACAATGTGATCCTGGCTGGACTGGACCAAGATGTGACAAACCCTGCACAGATGGTACTTATGGAGATGGCTGCCGCTTCCTGTGTAAAACCTGCAATCATGGCCACTGTGACCATGTGACAGGAAGTTGCATTTGTCTTCCTGGCTTCCAGGGTGAGAGAGTGGCGGTTGGGGATGGGAGCCCTACAGTCCGCATGAAGCATCATGTTTATACTGTGTTGGCCAACATGGGTTCAGCCATGCCGTGCATGACTCTTTGGTCATCTGGTTTACCCAGGGTTACAGTCTCTCATCATGATCCTGAGCTCACATTTAACCACAGCTTCATTGAGCAGCCATCATCCGGCTGGGTGACTGATTCATTTGAAACTGATGATGAAGGAGAGGCCATCTACTGTGAACCGCCCAGGGAAGATGTTCTTACTGTGGCCAGTGGAGAGCTTCAGGAACTGAACTCCAAGTGTAACTTCTTCCCTGACCCATCAACCTTCAGCAGCGAGGACATGTCACAAGCTTTTGGTATCCCTCGTACTTCTAGCATTGCCAAATCCAAACGACCTTCAGTCTCTTTCGCAGAGGGCACAAAGTTCAGCCCTAAAGAGCGCCGTAGCTCGACCCAAGATCTGCCAGGAGCTACTCGGAAACCCAAAGCCTGGGGTGTGCTGATGATCTCTGCCCTGCAAGGAGGACAGGGAAACCATAGTGAGATAGAAACAGAAAAAGAAGAAAAAAACAATGAGGAGAACATCTCCGCTGAGGAGCAAGCAGCTGCCTCTGAAACATCACAATCCGACTCGGAAAGATATAGTTCTGGCCCACTCAGGACTTACCTCACTGTGCCCGGTGGGAGACGACGCACACTTTCCAATACCAAGAAGAACACCCAGCCATCTGATGGCAGCCAGGATGCAGATTCAGAGAAGTTAACAACTGTTTATGTGACTGTGGGTAAGGCCCAAAAGATGGCTAAACAAGAGCCTCCTTCGGAAGGGCCCGTTCAGGCGATGCTGCGCAGACTAGGCAGCCTCCAGAGACAAAAAGAGGAGGCCGCTCAGCCCAAAGGCAGAGGGCAGGCGATTGCCAAGCCCCCGCGGAGGAAACTGGGGGCACGGGCCAGTGCCTGGGAGCAAACTACTGGGTCAGGCCAATCAGAGGTGGTCATGAGGAAACCTAGTCGCAGGAAACACAGCTCCCTCAGCTCTCCCTGCACAGTAGGGGCAACAGACTTTCCTCAGGAGAACAGCACTCCCAAGCGGCCCTTGTCCTCTATTTTAAAAAGTGTTCCAGAGAGCGAAATGCTCCACAATTTAGGGGTGGAGCAAGACACTGAAGTAGATTGTGAGACAGAGACTCTGACAGACCACGCTTATGAGACTGTGGCTCCGTCTGATGGGGTCTCCACCTCTTCAGAGATTATTATTAATGAAACAGTTATGGACCAAGCAGAAAATGAGCCGAGTTATGAGAATGTTTATGTAAAGCATTCATAATATTGCTGAACCTTAAAGCAATAATTCCCTTTTAAGTAGTACTGTATGTAAATTTTGCATAAACTGCATAAACATATCTACATCAAAAATTTTGTTTGTTCATATAGTTTCATTATAATTTCCATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325357 lncRNA downstream 335 4796091 ~ 4796445 (-) True G286997
TU325474 lncRNA downstream 25344 4771077 ~ 4771436 (-) True G287111
TU325472 lncRNA downstream 27942 4768631 ~ 4768838 (-) True G287109
TU325471 lncRNA downstream 28930 4767182 ~ 4767850 (-) True G287108
TU325333 lncRNA downstream 35433 4760801 ~ 4761347 (-) True G286974
TU325494 lncRNA upstream 34985 4840887 ~ 4841553 (-) True G287129
TU325309 lncRNA upstream 72238 4878140 ~ 4881638 (-) True G286962
TU325521 lncRNA upstream 217443 5023345 ~ 5023593 (-) True G287154
TU325371 lncRNA upstream 220219 5026121 ~ 5027092 (-) True G287011
TU325529 lncRNA upstream 325240 5131142 ~ 5140674 (-) True G287161
CI01000072_04613981_04618187.mRNA mRNA downstream 178593 4613440 ~ 4618187 (-) True CI01000072_04613981_04618187
CI01000072_04602970_04610481.mRNA mRNA downstream 186299 4602849 ~ 4610481 (-) True CI01000072_04602970_04610481
CI01000072_04577347_04600719.mRNA mRNA downstream 196061 4577049 ~ 4600719 (-) True CI01000072_04577347_04600719
CI01000072_04514012_04539785.mRNA mRNA downstream 256904 4512778 ~ 4539876 (-) False CI01000072_04514012_04539785
CI01000072_04315603_04316880.mRNA mRNA downstream 479900 4314911 ~ 4316880 (-) True CI01000072_04315603_04316880
CI01000072_04810045_04816219.mRNA mRNA upstream 3994 4809896 ~ 4816492 (-) True CI01000072_04810045_04816219
CI01000072_04818513_04830986.mRNA mRNA upstream 12243 4818145 ~ 4831797 (-) True CI01000072_04818513_04830986
CI01000072_04932845_04949502.mRNA mRNA upstream 126798 4932700 ~ 4949502 (-) True CI01000072_04932845_04949502
CI01000072_04992647_05006768.mRNA mRNA upstream 186316 4992218 ~ 5006768 (-) True CI01000072_04992647_05006768
CI01000072_05039232_05046122.mRNA mRNA upstream 233184 5039086 ~ 5046474 (-) True CI01000072_05039232_05046122
TU325381 other downstream 402557 4386145 ~ 4394223 (-) True G287021
TU324366 other downstream 820713 3970270 ~ 3976067 (-) False G286205
TU324361 other downstream 820778 3970270 ~ 3976002 (-) False G286205
TU325650 other upstream 574818 5380720 ~ 5382001 (-) True G287264

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018259 True 3705 mRNA 0.45 11 NC_007126.7 28209966 ~ 28223906 (-)