RNA id: CI01000072_04932845_04949502.mRNA


Basic Information

Item Value
RNA id CI01000072_04932845_04949502.mRNA
length 2292
RNA type mRNA
GC content 0.57
exon number 19
gene id CI01000072_04932845_04949502
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 4932700 ~ 4949502 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCCGGGCTGGAGCAGTATAAACCGAGGGGTTTTGATTTGTGATGAATGCTGTTCTGTGCACCGGAGCCTGGGCCGACACATTTCCATCGTCAAACACCTGCGACACAGCGGCTGGCCTCCTTCCTTACTGCAGATGGTGCAGACGTTAGCCAGTAACGGCGCTAACTCGATCTGGGAACACTCCCTGCTGGATCCAGCACAAGTTCAGAGTGGGCGCAGGAAACCGAACCCACAAGATAAAGTCCACCCCACTAAGTCAGAGTTTATTCGCGCCAAGTACCAGATGTTAGCCTTTGTCCACAAGCTGCCCTGCCGTGATGATGATGGGGTCACTACGAAGGACCTCAGCAAGCAACTGCACTCAAGTGTGCGGACAGGAAGTCTGGAGACGTGTTTACGGTTGCTGTCACTGGGGGCACAAGCCAACTTCTTTCACCCGGAAAAGGGCACGACCCCTTTGCATGTGGCTGCCAAAGCAGGGCAGGTTCTGCAGGCCGAGCTGCTGGTGGTGCAAGCAGGTCACGTGGAGCTCGCTGAGCGCTTGGTGGAGTGTCAGTATGAGCTCACGGACAGACTGGCCTTTTACCTGTGTGGACGTCGCCCAGATCACAAGAACGGTCATTATATCATCCCTCAGATGGCAGACAGCCTGGACCTCTCTGAACTGGCCAAGGCAGCCAAGAAGAAGCTTCAAGCGTTAAATAACCGCTTGTTCGAGGAGCTGGCTATGGATGTGTACGACGAAGTGGACCGTAGAGAGAATGATGCAGTGTGGCTGACAACTCAGAACCACAGTACGCTTGTGACCGAACGGAGTGCCGTCCCCTTCTTACCCGTCAACCCTGAATACTCAGCGACACGCAACCAGGGACGGCAGAAATTGGCTCGCTTTAATGCACGAGAATTCGCCACCCTCATTATTGACATTCTCAGTGATGCCAAGCGGCGGCAGCATGGAAAAGGCCTGACAAGCCCCACAGACACACTGGATCTGAGTCAGGCAGACGATGACCAGCACGATTATGACAGCGTAGCGTCTGACGAAGACACAGACAGCGAGCTGACCGCACATAATAACAACAACACCCAGCGCAACAACCGGGCCAAGAGCATGGACTCATCCGACCTGTCAGATGGGCCCATCACACTACAGGAGTATCTGGAGGTCAAGAAAGCACTGGCCTCCTCAGAGGCCAAAGTTCAACAGCTCATGAAGGTCAACAACAACCTGAGCGAGGAGCTGCGGAGGCTACAGAAGGAGATCACGCGGATGCAGACGGAGAACAGCGTGCTGCGGGGGGCCCAGGCTGGGGCCGGGGGCGCTCTGACCGGGGGTGGTGGCACAGGGCTGTGGACTGGTGGGGTAAGGGGTACATGTAGTGGAGGAGGGGTAGGCGGAGACTCCGGCCTAACCGCACCCTCGACCGCTCCCCTCCGCCGGGATAGACAAGCTTTCTCTATGTATGAGCCTGTGGGGACCACCCCCAAAGCTCTCACCCCAGCCCTGGACCCCCTGACGGGCCGCCTGCAGCCTCTCAGCCCCGTGCGAAAGGGCGCCCCTGCGGGTCCCACCCCCTACGGAGGGCCGCACCTGTCAGCCTCCACTGACGGACGATATAATCCTCCAAAAGCAGGAGAGAAATACGGGAGCGGTACTGATAGTGACTATGACAACTCTCAAACATACGATGTCTCTCTTGGTGTGGGCCGCAGCAGTGAGGAGGACAGCAGGGGGGATGTGGAAGACACAGAGGGTGACCCTGACCCCACGCTGCCCTGCACAGAAGACGTCATCCTCAAAACCGAGCAGGTCACCAAGAACATCCAGGAGCTCCTGAGAGCTGCACAGGAGTTTAAACACGACAGTTTTGTGCCATGCTCAGAGAAAATCCATTTAGCTGTGACGGAAATGGCCTCGCTGTTTCCTAAGAGACCAGCGCTGGATGCAGTACGTTCTTCCTTGAAGCTCCTGGGGGCCAGTGCGTCCCGTCTGCAGGTAGAGTGTCGTAAAGCGGCGCCCTCCGACTCGTCGGCCAGCACAGTGGACTACCAGCTGCTCACCCAGCAGGTCATCCAGTGCGCCTACGACATCGCCAAAGCTGCCAAGCAGCTGGTCACCATCACTACCCGTGAAAAAAAACAGTGACCCACCTGGCACACTGGGGTCCAGCGGGAAGGGGCAAAGACTGAGAAACGGGAGAGGAGGAAGACACTAAGTAAAAACTGACGGCTGGGAATCTTTGGTCAGGTTGATAGAAAAATTATGTGAGGGAACGAAGATGGGGAAAAAA

Function

GO:

id name namespace
GO:0001568 blood vessel development biological_process

KEGG:

id description
K05737 GIT1; G protein-coupled receptor kinase interactor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325309 lncRNA downstream 51062 4878140 ~ 4881638 (-) True G286962
TU325494 lncRNA downstream 91147 4840887 ~ 4841553 (-) True G287129
TU325357 lncRNA downstream 136255 4796091 ~ 4796445 (-) True G286997
TU325474 lncRNA downstream 161264 4771077 ~ 4771436 (-) True G287111
TU325472 lncRNA downstream 163862 4768631 ~ 4768838 (-) True G287109
TU325521 lncRNA upstream 73843 5023345 ~ 5023593 (-) True G287154
TU325371 lncRNA upstream 76619 5026121 ~ 5027092 (-) True G287011
TU325529 lncRNA upstream 181640 5131142 ~ 5140674 (-) True G287161
TU325576 lncRNA upstream 201222 5150724 ~ 5151489 (-) True G287206
TU325580 lncRNA upstream 212357 5161859 ~ 5162242 (-) True G287210
CI01000072_04818513_04830986.mRNA mRNA downstream 100903 4818145 ~ 4831797 (-) True CI01000072_04818513_04830986
CI01000072_04810045_04816219.mRNA mRNA downstream 116208 4809896 ~ 4816492 (-) True CI01000072_04810045_04816219
CI01000072_04796909_04805902.mRNA mRNA downstream 126798 4796780 ~ 4805902 (-) True CI01000072_04796909_04805902
CI01000072_04613981_04618187.mRNA mRNA downstream 314513 4613440 ~ 4618187 (-) True CI01000072_04613981_04618187
CI01000072_04602970_04610481.mRNA mRNA downstream 322219 4602849 ~ 4610481 (-) True CI01000072_04602970_04610481
CI01000072_04992647_05006768.mRNA mRNA upstream 42716 4992218 ~ 5006768 (-) True CI01000072_04992647_05006768
CI01000072_05039232_05046122.mRNA mRNA upstream 89584 5039086 ~ 5046474 (-) True CI01000072_05039232_05046122
CI01000072_05053749_05071797.mRNA mRNA upstream 104142 5053644 ~ 5071797 (-) True CI01000072_05053749_05071797
CI01000072_05099789_05108316.mRNA mRNA upstream 149919 5099421 ~ 5109781 (-) True CI01000072_05099789_05108316
CI01000072_05158807_05160357.mRNA mRNA upstream 208775 5158277 ~ 5161493 (-) True CI01000072_05158807_05160357
TU325381 other downstream 538477 4386145 ~ 4394223 (-) True G287021
TU324366 other downstream 956633 3970270 ~ 3976067 (-) False G286205
TU324361 other downstream 956698 3970270 ~ 3976002 (-) False G286205
TU325650 other upstream 431218 5380720 ~ 5382001 (-) True G287264

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018266 True 5031 mRNA 0.48 20 NC_007126.7 28431663 ~ 28480546 (-)
bowfin (Amia calva) AMCG00005784 True 7470 mRNA 0.52 19 CM030142.1 9299585 ~ 9330590 (+)