RNA id: CI01000072_05039232_05046122.mRNA


Basic Information

Item Value
RNA id CI01000072_05039232_05046122.mRNA
length 2523
RNA type mRNA
GC content 0.52
exon number 13
gene id CI01000072_05039232_05046122
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 5039086 ~ 5046474 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAACCTTGCAAAACAACATATGTTTTTTCTGTCAAAGATGATGTGTCACTTCTTAAGAACACTTTTTATGAGAATGACAGGGGTAAATCCATGTTAAATTCCCTTCTGCGCAATCTGAAATTCCCCTCTCTTTGTCCTGCAGCTGGGCCTGAGCAGTCTTTCCTTGCTTTCCCACCTGAGCTTGTTAAAACATACAGGTTAAGGACCAGTCACCCTCTCCTTGCTTTCTCCATCCCAGCCCGCTCTGTTCCGCACCCAGCCCCTCTTCTCCAGGCTCTCTATCCCCTCATGGGCACGATATCAGCCAGTGCAAGAGGACCACCGTCTCAACCCTAACAGCAGTCCTCACCATGGAGATGAAACAACCAATGATGATGAATCAAGAGGACGGGGGAAAGCAGGAGAAAGAACAGGAGTCGCAAGAGAATGGCAGACTGGTTGCGGACAGCGTTGGGGAGAAGGGTCAGAAATCCTGCTCCGGGCCTGGGCAGGTCTCCAACGGTTATCCCAGCACATCCCCACAAAGTCCCAGGGAAGGTGCGGGCGCTGGGATGGACAGGGGCAGCACCCCTGGAACACTCAGGACTCTGGTGGTCCAGCAGACCAGCCTGGATCCACCTAGGGAGACCTGGAGCAAAAAAATGGACTTCCTGCTGTCGGTAATCGGATATGCAGTGGACCTGGGCAACGTGTGGCGCTTTCCCTACATCTGCTACCAAAACGGAGGGGGTGCCTTTCTCCTGCCGTACCTGCTGATGGCTGTGTTTGGTGGCGTGCCTCTGTTCTACATGGAACTGGCTTTGGGCCAGTTTCACCGCAGTGGGTGTATCTCCATCTGGAAACACATTTGCCCCATCTTCAAGGGTATAGGCTTTGCCATCTGCATCATTGCACTCTACATTGCCTTCTACTACAATACCATAATGGCCTGGGCTCTCTATTACCTCCTGTCCTCCTTTCGCCCCACACTGCCCTGGACCACCTGCAACAACCGGTGGAACACTCCCAACTGCACCCGCTACCTGTCCACCGACTTGAATGTATCCTGGACCGAAAACTCCATCTCTCCCGCTGAGGAGTTCTATATACGGCAGGTGTTGCAGGTTCATCTGTCCCCTGGTCTTCATCAGCTGGGCTGGGTGAGCTGGCAGCTAGCCCTCTGTCTGTTGTTCATCTTCACTGTTGTCTACTTCAGCATCTGGAAGGGGGTCAAGACATCCGGCAAGGTAGTGTGGGTGACGGCTACTTTTCCATACCTGGTGTTGCTGATCCTGTTGATAAGAGGGGCCACCCTGCCGGGAGCATGGAGAGGAGTGATCTTCTACCTGAAACCTGATTGGAGCAAACTTCTAACAACTTCAGTTTGGCTTGATGCAGCTGCACAGATCTTCTTCTCTCTGGGTCCAGGCTTTGGTGTTCTCCTGGCCTTTGCCAGCTACAATCCCTTTCATAACAACTGCTACAAGTACACCTGGCTCACATTCATACCCTTTTCTACTCATTTTCTATTATCTGCTCCAAGATCTTTATATCTCTGTTTGATTTGCAGAGATGCATTGATCACAAGCTCAGTGAACTGTCTGACCAGTTTCCTGTCAGGCTTTGTGATCTTCACAGTGTTAGGCTACATGGCAGAGATGCGCCACCAAGGCGTGGAGACTGTAGCTAAGGATGCTGGTCCCAGTCTGCTCTTCATCATCTACGCTGAGGCTATTGCCAATATGCCAGCTGCTACGTTCTTCGCCATCATATTCTTCCTCATGATAATTATGCTGGGGCTGGATAGCACGTTTGCAGGTCTGGAAGGTGTAATTACAGCCATGTTGGACGAGTTCCCCCACCTGTTGGCCAAAAGAAGAGAATGGTTTGTGCTCGGCCTGGTGTGTGTCTGTTATTTGGGCGCCCTCTCCACTCTCACCTACGGTGGTGCGTTTGTTGTTAAACTATTTGAGGAGTATGCCACGGGCCCTGCTGTTATCACCGTAGTCTTCCTCGAAGTCATTGCTGTTTCCTGGTTCTATGGGACGACACGCTTCTGCAACGACGTGCAGCTGATGCTTGGCTTTGCCCCTGGTATTTTCTGGAGGGTCTGCTGGGTAGCCATCTGTCCCTGCTTCCTATTGTTCATTATTGGGAGTTTCCTGGCATTCCCGCCTGAGGTGAGGCTGTTTGACTACCTGTACCCTTTCTGGACCACAGTGCTCGGCTACTGCATTGGGGTATCTTCCTTCATCTGTGTGCCTTCCTACATGGTCTACTATCTGGTCACCACCAAAGGAACCTTCAAACAGCGTCTGTTAAAAAGCATTACCCCTGAGGCTTCGGGGTCCAGCGGCCCTCAGAGAGACACAATTGTCATCACCAATGCCGTGTGACACATTTCGTCCTCTGCTGGACATGTAGCACAAACGCGAAGGACCCGTGGCTCCTGTAAGGGCCCCGGCCGACCTCCCTTCACACCTCACCCCAGAGGAGTCTGCTACCTGTATTGTGTGATGGTGGGGCCAGGCCTCCGAATACA

Function

GO:

id name namespace
GO:0051610 serotonin uptake biological_process

KEGG:

id description
K05037 SLC6A4, SERT; solute carrier family 6 (neurotransmitter transporter, serotonin) member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325371 lncRNA downstream 11994 5026121 ~ 5027092 (-) True G287011
TU325521 lncRNA downstream 15493 5023345 ~ 5023593 (-) True G287154
TU325309 lncRNA downstream 157448 4878140 ~ 4881638 (-) True G286962
TU325494 lncRNA downstream 197533 4840887 ~ 4841553 (-) True G287129
TU325357 lncRNA downstream 242641 4796091 ~ 4796445 (-) True G286997
TU325529 lncRNA upstream 84668 5131142 ~ 5140674 (-) True G287161
TU325576 lncRNA upstream 104250 5150724 ~ 5151489 (-) True G287206
TU325580 lncRNA upstream 115385 5161859 ~ 5162242 (-) True G287210
TU325583 lncRNA upstream 121009 5167483 ~ 5167727 (-) True G287213
TU325600 lncRNA upstream 221700 5268174 ~ 5268465 (-) True G287230
CI01000072_04992647_05006768.mRNA mRNA downstream 32318 4992218 ~ 5006768 (-) True CI01000072_04992647_05006768
CI01000072_04932845_04949502.mRNA mRNA downstream 89584 4932700 ~ 4949502 (-) True CI01000072_04932845_04949502
CI01000072_04818513_04830986.mRNA mRNA downstream 207289 4818145 ~ 4831797 (-) True CI01000072_04818513_04830986
CI01000072_04810045_04816219.mRNA mRNA downstream 222594 4809896 ~ 4816492 (-) True CI01000072_04810045_04816219
CI01000072_04796909_04805902.mRNA mRNA downstream 233184 4796780 ~ 4805902 (-) True CI01000072_04796909_04805902
CI01000072_05053749_05071797.mRNA mRNA upstream 7170 5053644 ~ 5071797 (-) True CI01000072_05053749_05071797
CI01000072_05099789_05108316.mRNA mRNA upstream 52947 5099421 ~ 5109781 (-) True CI01000072_05099789_05108316
CI01000072_05158807_05160357.mRNA mRNA upstream 111803 5158277 ~ 5161493 (-) True CI01000072_05158807_05160357
CI01000072_05172707_05173819.mRNA mRNA upstream 126205 5172679 ~ 5174665 (-) True CI01000072_05172707_05173819
CI01000072_05208841_05218652.mRNA mRNA upstream 162367 5208841 ~ 5218652 (-) True CI01000072_05208841_05218652
TU325381 other downstream 644863 4386145 ~ 4394223 (-) True G287021
TU324366 other downstream 1063019 3970270 ~ 3976067 (-) False G286205
TU324361 other downstream 1063084 3970270 ~ 3976002 (-) False G286205
TU325650 other upstream 334246 5380720 ~ 5382001 (-) True G287264

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018271 False 2166 mRNA 0.51 13 NC_007126.7 28609025 ~ 28618502 (-)