Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU324425 |
| length | 1082 |
| lncRNA type | intronic |
| GC content | 0.49 |
| exon number | 2 |
| gene id | G286236 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000072 |
| NCBI id | null |
| chromosome length | 5473029 |
| location | 3501101 ~ 3502215 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU324438 | lncRNA | downstream | 28050 | 3393763 ~ 3473051 (-) | True | G286249 |
| TU324406 | lncRNA | downstream | 64902 | 3410662 ~ 3436199 (-) | True | G286219 |
| TU324482 | lncRNA | downstream | 109723 | 3391163 ~ 3391378 (-) | True | G286290 |
| TU324481 | lncRNA | downstream | 109951 | 3390707 ~ 3391150 (-) | True | G286289 |
| TU324477 | lncRNA | downstream | 117066 | 3383823 ~ 3384035 (-) | True | G286285 |
| TU324445 | lncRNA | upstream | 339455 | 3841670 ~ 3842062 (-) | True | G286256 |
| TU324371 | lncRNA | upstream | 467913 | 3970128 ~ 3976002 (-) | True | G286205 |
| TU324370 | lncRNA | upstream | 468055 | 3970270 ~ 3976002 (-) | True | G286205 |
| TU325197 | lncRNA | upstream | 550836 | 4053051 ~ 4065995 (-) | False | G286867 |
| TU325196 | lncRNA | upstream | 558544 | 4060759 ~ 4064416 (-) | True | G286867 |
| CI01000072_03455112_03462887.mRNA | mRNA | downstream | 38214 | 3454671 ~ 3462887 (-) | True | CI01000072_03455112_03462887 |
| CI01000072_03396929_03398233.mRNA | mRNA | downstream | 102082 | 3396647 ~ 3399019 (-) | True | CI01000072_03396929_03398233 |
| CI01000072_03379532_03381460.mRNA | mRNA | downstream | 118559 | 3379323 ~ 3382542 (-) | True | CI01000072_03379532_03381460 |
| CI01000072_03330998_03335358.mRNA | mRNA | downstream | 165743 | 3330817 ~ 3335358 (-) | True | CI01000072_03330998_03335358 |
| CI01000072_03270542_03289988.mRNA | mRNA | downstream | 210911 | 3270479 ~ 3290190 (-) | True | CI01000072_03270542_03289988 |
| CI01000072_03788767_03792874.mRNA | mRNA | upstream | 285955 | 3788170 ~ 3793728 (-) | True | CI01000072_03788767_03792874 |
| CI01000072_03844170_03870555.mRNA | mRNA | upstream | 341277 | 3843492 ~ 3870555 (-) | True | CI01000072_03844170_03870555 |
| CI01000072_03898250_03900844.mRNA | mRNA | upstream | 395950 | 3898165 ~ 3900844 (-) | True | CI01000072_03898250_03900844 |
| CI01000072_03908090_03922942.mRNA | mRNA | upstream | 405172 | 3907387 ~ 3922942 (-) | True | CI01000072_03908090_03922942 |
| CI01000072_03941680_03952617.mRNA | mRNA | upstream | 439116 | 3941331 ~ 3952617 (-) | True | CI01000072_03941680_03952617 |
| TU324139 | other | downstream | 501606 | 2993769 ~ 2999495 (-) | True | G286005 |
| TU323875 | other | downstream | 1330443 | 2168048 ~ 2170658 (-) | True | G285752 |
| TU323892 | other | downstream | 1492792 | 2005551 ~ 2008309 (-) | True | G285766 |
| TU323812 | other | downstream | 1873206 | 1602289 ~ 1602443 (-) | True | G285697 |
| TU324361 | other | upstream | 468055 | 3970270 ~ 3976002 (-) | False | G286205 |
| TU324366 | other | upstream | 468055 | 3970270 ~ 3976067 (-) | False | G286205 |
| TU324367 | other | upstream | 468055 | 3970270 ~ 3976002 (-) | False | G286205 |
| TU324368 | other | upstream | 468055 | 3970270 ~ 3976002 (-) | False | G286205 |
| TU325381 | other | upstream | 883930 | 4386145 ~ 4394223 (-) | True | G287021 |
