RNA id: TU325278


Basic Information

Item Value
RNA id TU325278
length 220
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G286940
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 4305299 ~ 4305518 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCATGGAGTGCATGAAAGAGCTTAGCCTGATGTTATATAAACAACAAGGGCCAAGGGTGGTCTGCACACACCTGGAGGGGCCTGGACCTTTCAGGAGAGAGTACAGGAATCATGTTCTAACATTAATAAGCTCAGAGTGGAAAATATGAGGGAGGCATCTGAGGAGAAAGTATACAGGCGATCTGAGGCAGGGCTGGATCAGAGAGAGCCTGATGTGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325275 lncRNA downstream 28037 4277003 ~ 4277262 (-) True G286937
TU325274 lncRNA downstream 28430 4276560 ~ 4276869 (-) True G286936
TU325218 lncRNA downstream 35285 4269022 ~ 4270014 (-) True G286883
TU325213 lncRNA downstream 211974 4093110 ~ 4093325 (-) True G286880
TU325210 lncRNA downstream 224086 4080982 ~ 4081213 (-) True G286877
TU325283 lncRNA upstream 4160 4309678 ~ 4309912 (-) True G286945
TU325286 lncRNA upstream 14038 4319556 ~ 4319768 (-) True G286948
TU325291 lncRNA upstream 26366 4331884 ~ 4338077 (-) True G286953
TU325383 lncRNA upstream 108019 4413537 ~ 4414351 (-) True G287023
TU325419 lncRNA upstream 114679 4420197 ~ 4420415 (-) True G287059
CI01000072_04284927_04303593.mRNA mRNA downstream 1706 4284426 ~ 4303593 (-) True CI01000072_04284927_04303593
CI01000072_04207000_04210775.mRNA mRNA downstream 94221 4206961 ~ 4211078 (-) True CI01000072_04207000_04210775
CI01000072_04197826_04201434.mRNA mRNA downstream 103865 4197826 ~ 4201434 (-) True CI01000072_04197826_04201434
CI01000072_04191370_04195085.mRNA mRNA downstream 110214 4191370 ~ 4195085 (-) True CI01000072_04191370_04195085
CI01000072_04156907_04167270.mRNA mRNA downstream 138029 4156907 ~ 4167270 (-) True CI01000072_04156907_04167270
CI01000072_04315603_04316880.mRNA mRNA upstream 9393 4314911 ~ 4316880 (-) True CI01000072_04315603_04316880
CI01000072_04514012_04539785.mRNA mRNA upstream 207260 4512778 ~ 4539876 (-) False CI01000072_04514012_04539785
CI01000072_04577347_04600719.mRNA mRNA upstream 271531 4577049 ~ 4600719 (-) True CI01000072_04577347_04600719
CI01000072_04602970_04610481.mRNA mRNA upstream 297331 4602849 ~ 4610481 (-) True CI01000072_04602970_04610481
CI01000072_04613981_04618187.mRNA mRNA upstream 307922 4613440 ~ 4618187 (-) True CI01000072_04613981_04618187
TU324366 other downstream 329232 3970270 ~ 3976067 (-) False G286205
TU324361 other downstream 329297 3970270 ~ 3976002 (-) False G286205
TU324367 other downstream 329297 3970270 ~ 3976002 (-) False G286205
TU324368 other downstream 329297 3970270 ~ 3976002 (-) False G286205
TU324139 other downstream 1305804 2993769 ~ 2999495 (-) True G286005
TU325381 other upstream 80627 4386145 ~ 4394223 (-) True G287021
TU325650 other upstream 1075202 5380720 ~ 5382001 (-) True G287264

Expression Profile