RNA id: TU325357


Basic Information

Item Value
RNA id TU325357
length 355
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G286997
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 4796091 ~ 4796445 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATACCCCATAGATTCTCTATGGGGTTCAGGTCAGGCGAGTTTGCTGGCCAGTCAAGCACAGTAACACCATGGTCATTGAACCAGCTTTTGGTACCTTTGGCAGTGTGAGCAGGTGCCAAATCCTGCTGGAAAATGAAATCAGCATCTCCATAAAGCTTGTCAGCAGAAGGAAGCATGAAGTGCTCTAAAATTTCCTGGTAGATGGCTGCGTTGACTGTGGACTTCAGAAAACACAGTGGACCAACACCAGCAGATGACATGGCAGCCCAAACCATCACTGACTGTGGAAACTTCACACTGGACTTCAAGCAACATGGTTTCTGTGCCTCTCCACTCCTCCTCCAGACTCTGGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325474 lncRNA downstream 24655 4771077 ~ 4771436 (-) True G287111
TU325472 lncRNA downstream 27253 4768631 ~ 4768838 (-) True G287109
TU325471 lncRNA downstream 28241 4767182 ~ 4767850 (-) True G287108
TU325333 lncRNA downstream 34744 4760801 ~ 4761347 (-) True G286974
TU325345 lncRNA downstream 41954 4753844 ~ 4754137 (-) True G286985
TU325494 lncRNA upstream 44442 4840887 ~ 4841553 (-) True G287129
TU325309 lncRNA upstream 81695 4878140 ~ 4881638 (-) True G286962
TU325521 lncRNA upstream 226900 5023345 ~ 5023593 (-) True G287154
TU325371 lncRNA upstream 229676 5026121 ~ 5027092 (-) True G287011
TU325529 lncRNA upstream 334697 5131142 ~ 5140674 (-) True G287161
CI01000072_04613981_04618187.mRNA mRNA downstream 177904 4613440 ~ 4618187 (-) True CI01000072_04613981_04618187
CI01000072_04602970_04610481.mRNA mRNA downstream 185610 4602849 ~ 4610481 (-) True CI01000072_04602970_04610481
CI01000072_04577347_04600719.mRNA mRNA downstream 195372 4577049 ~ 4600719 (-) True CI01000072_04577347_04600719
CI01000072_04514012_04539785.mRNA mRNA downstream 256215 4512778 ~ 4539876 (-) False CI01000072_04514012_04539785
CI01000072_04315603_04316880.mRNA mRNA downstream 479211 4314911 ~ 4316880 (-) True CI01000072_04315603_04316880
CI01000072_04796909_04805902.mRNA mRNA upstream 335 4796780 ~ 4805902 (-) True CI01000072_04796909_04805902
CI01000072_04810045_04816219.mRNA mRNA upstream 13451 4809896 ~ 4816492 (-) True CI01000072_04810045_04816219
CI01000072_04818513_04830986.mRNA mRNA upstream 21700 4818145 ~ 4831797 (-) True CI01000072_04818513_04830986
CI01000072_04932845_04949502.mRNA mRNA upstream 136255 4932700 ~ 4949502 (-) True CI01000072_04932845_04949502
CI01000072_04992647_05006768.mRNA mRNA upstream 195773 4992218 ~ 5006768 (-) True CI01000072_04992647_05006768
TU325381 other downstream 401868 4386145 ~ 4394223 (-) True G287021
TU324366 other downstream 820024 3970270 ~ 3976067 (-) False G286205
TU324361 other downstream 820089 3970270 ~ 3976002 (-) False G286205
TU325650 other upstream 584275 5380720 ~ 5382001 (-) True G287264

Expression Profile