RNA id: TU325371


Basic Information

Item Value
RNA id TU325371
length 737
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G287011
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 5026121 ~ 5027092 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGACAAGAGTTTCCCTGAATCCATCGAAGTGGGTCGTGAAATTTCCTGCAAGATCATGGACCGACTTGCGAGTGTAATTGGACAACAACATACAGGTCTGACGGTGGGATTGAGTTTGATGATCATCGTTGTGATTATCGTCCTCGCGGCTGTTGTTTACACTCCACCCGGCGCCACAGCGCGCTGCTTGAGAAGAAACAGGAGTGAAGAAATCCTCTCCCTGACTGCTAACAGAATTTCATGACTGCTAACAGAAAAAATATGAACTTTATGGATCTTTGTGTTGGACTCACAACATAGAATAAACTGTTAAACCATTAATAGGGGGACTGTGAACACTGTTTACCCCTTTAAATAGTGGTTTATTAAAGGATTAGTTCACTTTCAAATGAAAATTACCCCAAGCTTTACTCACCCTCAAGCCATCCTAGGTGTATATGACTTTCTTCTTTCTGATGAACACAATCGTAGAAATATTAATAAATATCCTGACTCATCCGAGCTTTATGCGTTACCAAACGAGTATGAACTGAAGAAAGTGTCTCCATCCATCATAAACATATTCCACACGGCTCTGGAGGGTTAATAAAGGCCTTCTGAAGCGAAGCGATGCGTTTGTGTAAAAAAAAAATCCATATTTAACAAGTTATAAAGTAAAATATGTAGCTTCTGCCAGACCGCCTTCCGTATTCTTCAAAAAAAGCTTACGCTGTATGTCCTACGCCTTCCCTATTCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325521 lncRNA downstream 2528 5023345 ~ 5023593 (-) True G287154
TU325309 lncRNA downstream 144483 4878140 ~ 4881638 (-) True G286962
TU325494 lncRNA downstream 184568 4840887 ~ 4841553 (-) True G287129
TU325357 lncRNA downstream 229676 4796091 ~ 4796445 (-) True G286997
TU325474 lncRNA downstream 254685 4771077 ~ 4771436 (-) True G287111
TU325529 lncRNA upstream 104050 5131142 ~ 5140674 (-) True G287161
TU325576 lncRNA upstream 123632 5150724 ~ 5151489 (-) True G287206
TU325580 lncRNA upstream 134767 5161859 ~ 5162242 (-) True G287210
TU325583 lncRNA upstream 140391 5167483 ~ 5167727 (-) True G287213
TU325600 lncRNA upstream 241082 5268174 ~ 5268465 (-) True G287230
CI01000072_04992647_05006768.mRNA mRNA downstream 19353 4992218 ~ 5006768 (-) True CI01000072_04992647_05006768
CI01000072_04932845_04949502.mRNA mRNA downstream 76619 4932700 ~ 4949502 (-) True CI01000072_04932845_04949502
CI01000072_04818513_04830986.mRNA mRNA downstream 194324 4818145 ~ 4831797 (-) True CI01000072_04818513_04830986
CI01000072_04810045_04816219.mRNA mRNA downstream 209629 4809896 ~ 4816492 (-) True CI01000072_04810045_04816219
CI01000072_04796909_04805902.mRNA mRNA downstream 220219 4796780 ~ 4805902 (-) True CI01000072_04796909_04805902
CI01000072_05039232_05046122.mRNA mRNA upstream 11994 5039086 ~ 5046474 (-) True CI01000072_05039232_05046122
CI01000072_05053749_05071797.mRNA mRNA upstream 26552 5053644 ~ 5071797 (-) True CI01000072_05053749_05071797
CI01000072_05099789_05108316.mRNA mRNA upstream 72329 5099421 ~ 5109781 (-) True CI01000072_05099789_05108316
CI01000072_05158807_05160357.mRNA mRNA upstream 131185 5158277 ~ 5161493 (-) True CI01000072_05158807_05160357
CI01000072_05172707_05173819.mRNA mRNA upstream 145587 5172679 ~ 5174665 (-) True CI01000072_05172707_05173819
TU325381 other downstream 631898 4386145 ~ 4394223 (-) True G287021
TU324366 other downstream 1050054 3970270 ~ 3976067 (-) False G286205
TU324361 other downstream 1050119 3970270 ~ 3976002 (-) False G286205
TU325650 other upstream 353628 5380720 ~ 5382001 (-) True G287264

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018270 True 1764 lncRNA 0.32 2 NC_007126.7 28594543 ~ 28596509 (-)