RNA id: TU344208


Basic Information

Item Value
RNA id TU344208
length 1538
lncRNA type read_through
GC content 0.39
exon number 3
gene id G303019
representative True

Chromosome Information

Item Value
chromosome id CI01000091
NCBI id null
chromosome length 1322612
location 369963 ~ 390965 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAGAATGAACCAATTCATCAACTGAAAGAACTGGGTGGATATCAACCACAAGCCTAGTGATTTAGTGATCTGCAAAATTGCTCAAACTGTTTTTACAGGAGATCTTTGCCAACATCTCTGTTGAGTTTTTCAACAGTTTAGACACCATGTCAGAGGCAAGCATGATCTGTTTAATGTTTTCTTGGACGTGACAATATTAAGTATTGTCAAACTATTATTATGGAATGATGTCAATGCAGTATCAATAAGTTGTTTTACAGCAAAATTGCTCAAACTGTTTTTACAGGAGATCTTTGCCAACATCTCTGTTAAGTTTTTCACCAGTTTAGTCACCATGTCAGAGACAAGCATGACCTGATCTTTTCTTGGACATGAGAATATTCAGTATTGTCAAACTATTATTATGAAATGATGTCAATGCAGTATCAATAAGTTGTTTTACAGAACTATTTATTTTAATAAACAAATAGTAAGACAAATTTAATGATCAAGACATCTTTGTGCAAAAAATGCTAATTTATAATGATAAGAAGGTTAACACACATTTTATAAAATCTGATTAATGAAACTATTCCTATTGTCATATTAAACATAAATTGCAAGAATGGCTTGTTTATAAAAAAAAAAAAACAGATCTCTGCTTCCCTGAGTTTGATTCCTCTCATCACATTATACACATTTTTCTCTTTCAGTGATCTGTATAATCACAGCACAAAACCTCAGTAAATAAACTGTCATATCAGACACTGTCCTTCTACTTCTCCTTAGAAAAAAAATCCGCAGGTGGGAATAAAGAGGTTTTACAGGAAAAAAAGTCTTTGCAAGTAAAAAGTCTTTGTATGCTTGATCTCTTTCAGACGTAGGCTTTGCTGGTGGCAACAGACCGTGGCTGAGAGTACTTGATGCCGTAGTTGTCGTCCTTAGGTGGGCAGGAGCTACACAGTATACCTCCTCCCAGGATCAGCAGTGCAGCTGCACCCCATCCAATATATAGAGAAGCCCCAATCTCCCTTCTTTGAGCATCTGTGAGCAAGGGATTGTAGAAATCCCTGATGATGGTGTTAGCTGACCAACAGACGGGGACCAGAACCAACACTCCAGCAACGATGAAGATTATACCACTAGCGATAGCCACCTTTGCCTTTGTGTCTTCCCTCTCGACAAAGCTGGTACATTTTCCTCCAGCAATTCCCAGGATGATCCCAAAGATGCACACAATGATGGCGATGACCACAAGTGCCCGAGCCGCCTGCAAGTCCTGAGGTAAGGCCAAGAGGGAGTCATAGATTTTGCACTGCATTTGTCCTGTGCTTTGTATCACACAGTTCATCCACAAGCCTTCCCAGATGGTCTGCGCAGTAACGATATTGGCTCCAATGAATGCTGTCACCTTCCACATAGGAAGGGCACAAATCACAATAGCTCCTATGAAACCAATAATGCCTAGGGACATGCCCAGGATCTGTCGACACATAGACACCATTTTTTTCTCGTTTGCTTGGCTTCGTTTGCTTGAAAGTGTTCGCTCTTCTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU344205 lncRNA downstream 798 368087 ~ 369165 (-) True G303017
TU344183 lncRNA downstream 36031 333688 ~ 333932 (-) True G303005
TU344180 lncRNA downstream 40495 329224 ~ 329468 (-) True G303002
TU344145 lncRNA downstream 128670 241060 ~ 241293 (-) True G302970
TU344118 lncRNA downstream 180068 189586 ~ 189895 (-) True G302946
TU344277 lncRNA upstream 249451 626991 ~ 627441 (-) True G303077
TU344330 lncRNA upstream 635920 1013460 ~ 1013753 (-) True G303123
TU344340 lncRNA upstream 674983 1052523 ~ 1052915 (-) True G303133
TU344345 lncRNA upstream 683006 1060546 ~ 1060765 (-) True G303138
TU344355 lncRNA upstream 697840 1075380 ~ 1075589 (-) True G303148
CI01000091_00348777_00349430.mRNA mRNA downstream 20234 348467 ~ 349729 (-) True CI01000091_00348777_00349430
CI01000091_00346274_00346930.mRNA mRNA downstream 22453 346017 ~ 347510 (-) True CI01000091_00346274_00346930
CI01000091_00337653_00338300.mRNA mRNA downstream 31376 337647 ~ 338587 (-) True CI01000091_00337653_00338300
CI01000091_00265846_00269683.mRNA mRNA downstream 99603 265840 ~ 270360 (-) True CI01000091_00265846_00269683
CI01000091_00108499_00117102.mRNA mRNA downstream 250854 108220 ~ 119109 (-) True CI01000091_00108499_00117102
CI01000091_00400737_00412559.mRNA mRNA upstream 22900 400440 ~ 412559 (-) True CI01000091_00400737_00412559
CI01000091_00465845_00496451.mRNA mRNA upstream 87456 464996 ~ 496600 (-) True CI01000091_00465845_00496451
CI01000091_00502517_00506846.mRNA mRNA upstream 124977 502517 ~ 506846 (-) True CI01000091_00502517_00506846
CI01000091_00522844_00581962.mRNA mRNA upstream 144411 521951 ~ 581962 (-) True CI01000091_00522844_00581962
CI01000091_00637317_00642235.mRNA mRNA upstream 259628 637168 ~ 642235 (-) True CI01000091_00637317_00642235
TU344246 other upstream 97062 474602 ~ 562944 (-) True G303047

Expression Profile