RNA id: CI01000092_00015546_00042149.mRNA


Basic Information

Item Value
RNA id CI01000092_00015546_00042149.mRNA
length 2714
RNA type mRNA
GC content 0.46
exon number 12
gene id CI01000092_00015546_00042149
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 15401 ~ 42149 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGCGCTGCCTTGTTGGAGTTCTTTAAGTCAAAGAGGACAATCCAGCACAACTGGCGTACCAGGTTTTTGAGAGCTCCTCATGAACTGCACGGAAGAATGGTGCTGGCTTTTGAGGTCCAGTCTTCTGGCGGCGGCCTGACTAGAGATAACATTCATCCAGCCATCCAGCAAAGGAAGACCACTCCAACCCCAGCTCATCCACAGCCTCAGAACGTTCAAATGTCAGCCAACCAGGAAGCACAATCAGATGAACTGCTGGCTCTGGCGAGCATATATGATGAAGAGGAGTTTAACAGGACAGAATCAAGGCAGAGTGCCAAGATACATCTGTGCCTTGAGCTTCCTCCTAACTTCAGACTGCAAGTCAAGGGGGAGGCATACATAGAGTGTGGCATATCCTTTCTACCCCCCGTGGTTCTGAGTTTTGAACTACCTACAGACTACCCTTCATCATCTGCTCCAGTCTTTACTCTAAGCTCCAAATGGCTTTCAAGATTCCAGATCACTGCACTTTGCAAGAGACTGGACGAACTTTGGGAAGAGAACAGGGGCAATGTGATTCTTTTTACCTGGATCCAGTTTCTAAAGGAAGAAACTCTAGAATTTCTGAACATCCAGTCTCCACTCGAGATCCAAACCATTGGTGGGCAGCCTCAATATGAATCTGGTCAGAACCAAGCTGTAGACACTGCTGTAGAAAAGAATAAAGTGCAAGAGTTGGACCAACGAGCAGTTCAAGAAATTGAGCCTCACACAGATATACTAACCCAGCTGCTGGATTTTAATGAAGCTCAGAAGCAGAAGGTGTTTGATGGCAAGGTTTTTTGCTGTGGAATCTGCTTCTCTGAGAATCAGGGTTCCAACTCTTTGCTCTTCAAAGAGTGTCAGCATGTCTACTGCAAGGCCTGTGTGAAGGAATACTTTCAGATCCAAATTAGAGATGGCAAAGTCCAGTGCCTTACTTGCCCTGAGCCTGAGTGTATGTCCATGGCCTCTCCTGCACAGGTGAAACTTCTCGTGGGCGAAGATGAATTTGCCCGCTATGACCACCTCCTTCTGAGGTCGAGTCTGAACCTAATGGCAGATGTTGATTATTGTCCACGCACGAGTTGCTGCATGGCTGTGATCATCGAGCCTGACACCAACATGGGCATCTGCCCCTCATGCCAGTTCGTCTTCTGCACACTCTGCAAGCGAACATACCATGGCCTCTCTCTCTGCAAAGAATGCTTTAAGACCAAGCAGAAAGGCTCTGCCTACGACATCCAGGGAATCACACCCAGTAGTGACGGAACACCACGAGGTTTTGCCAATTGCCATAAACTAAGAAGCATAAGAAGGAATGTTCAAATGTCAGCCAACCAGGAAGCACAATCAGATGAACTGCTGGCTCTAGCGAGCATATATGATGAAGAGGAGTTTAACAGGACAGAATCAAGGCAGAGGGGCAAGATACATATGTGCCTTGAGCTTCCTCCTAACTTCAGACTGCTAGTCAAGGGGGAGGCATGCATAGAGTGTGGTATATCCTTTCTACCCCCCGTGGTTCTGAGTTTTGAACTACCTACAGACTACCCTTCATCATCGGCTCCAGTCTTTACTCTAAGCTCCAAATGGCTTTCAAGATTCCAGATCACTGCACTTTGCAAGAGACTGGACGAACTTTGGGAAGAGAACAGGGGCAATGTGATTCTTTTTACTTGGATCCAGTTTCTAAAGGAAGAAACTCTAGAATTTCTGAACATCCAGTGTCCACTCGAGATCCAAACCATTGATGGGCAGCCTCAATATGAATCTGGTCAGAACCAAGCAGTAGACACCGCTGTAGAAAAGAGTAAAGTGCAAGAGTTGGACCAACGAGCAGTTCAAGAAGTTGACCCTCACACAGATATACTAACCCAGCTGCTGGATTTTAATGAAGCTCAGAAGCAGAAGGTGTTTGATGGCAAGGTTTTTTGCTGTGGAATCTGCTTCTCTGAGAATCTTGGTTCCAACTCTTTGCTCTTCAAAGAGTGTCAGCATGTCTACTGCAAGGCCTGTGTGAAGGAATACTTTCAGATCCAAATTAGAGATGGCAAAGTCCAGTGCCTTACCTGCCCTGAGCCTGAGTGTATGTCCATGGCCTCTCCTGCACAGTTGAGTCTGGACCTAATGGCAGATGTTGTTTATTGTCCACGCATGAGTTGCTGCATGGCTGTGATCATCGAGCCTGACACCAGCATGGGAATCTGCCCCTCATGCCAGTTCGTCTTCTGCACCCTCTGCAAGCGAACATACCATGGTCTCTCTAACTGCAAAGAATATGAGCTTTGCAGGTTGAGGGATGAGTACCTCGCTGCCAGTGAAAAGGAGAAGGAACAGCTTGAAAAGAGTTATGAAAAGCAGCTAATTCAAAGAGCAACTGATGAGTCTTTAACTGAAGACTGGCTGAAGGATAACTCCAAACAGTGCCCTTCCTGTGGTGCTAACATACAGTGCTCGACAGAAGGGAACCCTACAGCCACTACAGAGACTCTAGCTCTCCGTGCTATACTGATGAATAGTGGCTTTTGCCGACATGTTAATTAAAAAATATGACAGATAACTGATTGATGACAAATATTTTTTTTTAAATCACTCATATGAACTGAAACTTTTTTAATAGTGCTGAACTTTATTAGAAAATGAACAATAATGACTTAAACATGTGAATGTTTGTAACTATTAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345409 lncRNA upstream 37364 79513 ~ 86265 (-) False G304004
TU345410 lncRNA upstream 37376 79525 ~ 86265 (-) True G304004
TU345420 lncRNA upstream 49486 91635 ~ 93404 (-) True G304012
TU345466 lncRNA upstream 224515 266664 ~ 266947 (-) True G304050
TU345468 lncRNA upstream 239086 281235 ~ 281438 (-) True G304052
CI01000092_00103480_00114306.mRNA mRNA upstream 60019 102168 ~ 114742 (-) True CI01000092_00103480_00114306
CI01000092_00116452_00128007.mRNA mRNA upstream 73186 115335 ~ 128007 (-) True CI01000092_00116452_00128007
CI01000092_00156990_00162891.mRNA mRNA upstream 114841 156990 ~ 162891 (-) True CI01000092_00156990_00162891
CI01000092_00174874_00180333.mRNA mRNA upstream 132725 174874 ~ 180333 (-) True CI01000092_00174874_00180333
CI01000092_00237358_00269420.mRNA mRNA upstream 194163 236312 ~ 271283 (-) True CI01000092_00237358_00269420
TU345836 other upstream 1013155 1055304 ~ 1055722 (-) True G304368
TU345843 other upstream 1016176 1058325 ~ 1058864 (-) False G304369
TU345840 other upstream 1016218 1058367 ~ 1058920 (-) False G304369
TU345842 other upstream 1016218 1058367 ~ 1058864 (-) True G304369
TU345834 other upstream 1044513 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00016643 True 1311 mRNA 0.47 6 NC_007126.7 3808996 ~ 3816757 (+)