RNA id: CI01000092_00271933_00272986.mRNA


Basic Information

Item Value
RNA id CI01000092_00271933_00272986.mRNA
length 1599
RNA type mRNA
GC content 0.42
exon number 1
gene id CI01000092_00271933_00272986
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 271388 ~ 272986 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATTCCCAACCCAACCATGGGGCATCTGAATGAAGGGAATAACACGAACTGCTCCATCAGTGAATTCAAGCGCACCGTCTACCCAGTTGCCTATCTGTTCATCTTTTCCCTTGGGCTTATTGGAAACCTCATGTCCCTGTTTTTCTTCATTTCCTCTTCATTGAGAAGAAAAGCATATTTTTCCCCAGTCAATATCCTCATGCTCAATCTTCTTCTATCTGATCTGATGATGGTGTGCTCGTTGCCCTTCCGAGCTGCTTACTATCTCATGGAATCCGACTGGGCCTTCGGAGACGTCACCTGTCGGATCATGTCCTACGTCTTCTACATCAACATGTACGGCAGCGTCTACTTCCTCATGGTTCTGAGCATGGTACGCTTTGTTGCCATCGTGAAGCCGTTCACATACGTGCGCTGGCAAAATTCTCGGAGAGCCTGGACGATAAGCATCGTCATCTGGCTGATTGTGTCCCTGACGTCCATCCCGCTTCTGGGAGCTGGAACTTCGATTGAGTCTGGACGAATCAAATGCCTGGAACTGAACCAGTCCCATTTGAAGACCATTATCATGTTGAATCGATGCGTCTTGTTTTTAGGCTTTGTTATGCCCTTCACGGTCATCTCGGTCTGTTACATTTTTGCGGCCTTGTATCTGCTAAAGCTCAAGAAGACCAGGCAGAATCAAAGATCTCAGTTGAATCACAAGAAGTCCTGTTCTCTCGTGATCATAGTTCTGCTGATTTTCCTCGCATGCTTTATGCCGTATCACGTCGTCCGAACTCTGTTTTTGGAGGCGGAGATGGATATTAGTAACAAAGGTTACGGAGAGTCCTGCCATTATATTCAAAGCCTGAGAAAGGCCGCGGTCATCACACACTGTCTGGCTTCGGGAAACAGTTGCCTGGATCCGCTGCTTTTCTTTTTCGTAGGGGAAAACTTTATTAGCTTTTGGAGACAGCATACACCCAGAAGACAGAGTTGTATAATTGAGCAGAATGTGAAAGTGTCAGAGAAGATAAACAACGATATAGAGCGACGATTCAGACGGATATAGAGTGTTTGGAACCTGTCGGGACTTGAGAGGGAAATTCCTAAAAAAAAAAAACTATATCTGTGTTGGATCTGTGGTCCCATGCTGGAAGAACTCGATTAACCTCCAGTAAGCCACAATAGCTTTGTTTCCATTCAAAGTTGTGAACTGAACTAATGTGAATATTGCATAAAACATTATAATAGCGAATAAATCAGTGTTTGTGTAATTTACCAAATCCTTGTGAGGACAGACTTCGGCTCTGGAATTTCAGAATGACTAAAACAACTCAAATATTACTTAAATATTTATAATATCTCAGTTGTTTCTCCTAGAGATTAAATCGAGCCTTCTGCTTTTCGGATGTTTCTCCTGAGGAAAAAGATGTGTTTTAGACAATGTCTCACAATGTCTAAATTTTATTGTATGTCAACATTGGCTCATTTTTTTCTTTTTTTTTTTTTTTTTTTACAGATAGATAACCCCAAAATCAACCTATTAACTTTTGTTGTATGGAAAAAAACGTTTCCTTTGTGTTTTTGAGTGTACTATCCCTTTAAGGTATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345466 lncRNA downstream 4441 266664 ~ 266947 (-) True G304050
TU345420 lncRNA downstream 177984 91635 ~ 93404 (-) True G304012
TU345409 lncRNA downstream 185123 79513 ~ 86265 (-) False G304004
TU345410 lncRNA downstream 185123 79525 ~ 86265 (-) True G304004
TU345433 lncRNA downstream 248940 22159 ~ 22448 (-) True G304025
TU345468 lncRNA upstream 8249 281235 ~ 281438 (-) True G304052
TU345469 lncRNA upstream 8533 281519 ~ 282033 (-) False G304053
TU345470 lncRNA upstream 9195 282181 ~ 282453 (-) False G304053
TU345471 lncRNA upstream 9195 282181 ~ 282555 (-) True G304053
TU345477 lncRNA upstream 64029 337015 ~ 337687 (-) False G304057
CI01000092_00237358_00269420.mRNA mRNA downstream 105 236312 ~ 271283 (-) True CI01000092_00237358_00269420
CI01000092_00174874_00180333.mRNA mRNA downstream 91055 174874 ~ 180333 (-) True CI01000092_00174874_00180333
CI01000092_00156990_00162891.mRNA mRNA downstream 108497 156990 ~ 162891 (-) True CI01000092_00156990_00162891
CI01000092_00116452_00128007.mRNA mRNA downstream 143381 115335 ~ 128007 (-) True CI01000092_00116452_00128007
CI01000092_00103480_00114306.mRNA mRNA downstream 156646 102168 ~ 114742 (-) True CI01000092_00103480_00114306
CI01000092_00335844_00338581.mRNA mRNA upstream 62340 335326 ~ 338581 (-) True CI01000092_00335844_00338581
CI01000092_00409098_00411916.mRNA mRNA upstream 135867 408853 ~ 411916 (-) False CI01000092_00409098_00411916
CI01000092_00418628_00428488.mRNA mRNA upstream 144836 417822 ~ 428620 (-) True CI01000092_00418628_00428488
CI01000092_00506401_00508318.mRNA mRNA upstream 232753 505739 ~ 508524 (-) True CI01000092_00506401_00508318
CI01000092_00508717_00509840.mRNA mRNA upstream 235608 508594 ~ 510328 (-) True CI01000092_00508717_00509840
TU345836 other upstream 782318 1055304 ~ 1055722 (-) True G304368
TU345843 other upstream 785339 1058325 ~ 1058864 (-) False G304369
TU345840 other upstream 785381 1058367 ~ 1058920 (-) False G304369
TU345842 other upstream 785381 1058367 ~ 1058864 (-) True G304369
TU345834 other upstream 813676 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU152767 True 255 lncRNA 0.34 2 CI01000026 12503262 ~ 12604181 (+)
tiger barb (Puntius tetrazona) TU152767 True 2908 lncRNA 0.33 3 NC_056713.1 3481163 ~ 3485630 (-)