RNA id: CI01000092_00335844_00338581.mRNA


Basic Information

Item Value
RNA id CI01000092_00335844_00338581.mRNA
length 1116
RNA type mRNA
GC content 0.43
exon number 2
gene id CI01000092_00335844_00338581
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 335326 ~ 338581 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCACGGCGTTCAACAAAGTCTAGGAACTCAGCATTACTGTGATATAGGCAATAATGCTGGCACAACCGCCACTTTGCTCTCATCCACTCATGATGGCGACAGCAACAATCTGCATGTCTGGCTGCTGGCATCAGTTACACTGCCCAACGAATTAAAGACAAAGACACTAGTCTTGAATTCTTCCACTTATGTAGGGCTTCAAATGGGAATGCAGTTTAAAGGCACTGGGACCCAGAAGAAAACCAGTGCAGTGGCTTTCCACTTCTTCACGCTCAAACCACAGGAATTTGGAGTAACTCTCTCCAGATCTGAGGCATATGAGTTAACAGGCCTGGATGTAGCAGAGCCTGAGCAGAATACCTGCCTAGACTCCATCTCTCAGTCAGTTTTTGAAGGCCCCGTAGCGGCTGGCTTTGCTGATAAAGTTCTTCAGCAGATCGTGGTCCATGTCGGCGAAGGCCTGCGTCTGAGTGACGGCCGTCAGGTGGTTAACGCAAAACTTGAAACAGAACTCTTCCAGATCCTGCACATGAAGAGTGGATGGACTGATTCAATGAGAAAGAGAACCACCACCAAAGACCTACAGAATAATATATGAAACCGCAAATATATGTACATGTTTAGGGCTCTGTTCCAAAACCTAGTGAGCTGTCTACCTAGACAGCATTTTTAGACATCCTATGTGTGCTATCTTTAGTTATAGGTATTAGGGAAATTGATACAGCTTAGTGTCGTGATATTTTGCATGGGAATATTGTATTGATCTTTTCAGAATTTCGGCTCGGGATTGTTAGTATTCTGCATAACTTTACCATAGGCTCTGCACTTATAATGTGGGAAATAATCATTTGAAATCTTGCTTTCAGACTGTAATTTTTTAGAGAGAAGCAGTCAAGCAAAAGGAGGATCTACATACTGTAAGTGTTTTTGTGACATTTCTAGTTTGATTTTAGTGCTGTGTCGTTGCTAGGAAAGTTTGTTTACTGTATTCACGTATTCACTGTATTCAGTAGCACTGATTTTAAATCAGTGCTACTGCATCTCTCTCTTTCCCTCTCGGACATGCGCATTGGTCTGCGTATAAAGGAAGTGTGTTCTCAGTGAAGGCTAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345471 lncRNA downstream 52771 282181 ~ 282555 (-) True G304053
TU345470 lncRNA downstream 52873 282181 ~ 282453 (-) False G304053
TU345469 lncRNA downstream 53293 281519 ~ 282033 (-) False G304053
TU345468 lncRNA downstream 53888 281235 ~ 281438 (-) True G304052
TU345466 lncRNA downstream 68379 266664 ~ 266947 (-) True G304050
TU345516 lncRNA upstream 67683 406264 ~ 408867 (-) True CI01000092_00409098_00411916
TU345570 lncRNA upstream 153598 492179 ~ 492631 (-) False G304126
TU345568 lncRNA upstream 153719 492300 ~ 492631 (-) True G304126
TU345590 lncRNA upstream 174522 513103 ~ 513417 (-) True G304146
TU345591 lncRNA upstream 175309 513890 ~ 514356 (-) True G304147
CI01000092_00271933_00272986.mRNA mRNA downstream 62340 271388 ~ 272986 (-) True CI01000092_00271933_00272986
CI01000092_00237358_00269420.mRNA mRNA downstream 64043 236312 ~ 271283 (-) True CI01000092_00237358_00269420
CI01000092_00174874_00180333.mRNA mRNA downstream 154993 174874 ~ 180333 (-) True CI01000092_00174874_00180333
CI01000092_00156990_00162891.mRNA mRNA downstream 172435 156990 ~ 162891 (-) True CI01000092_00156990_00162891
CI01000092_00116452_00128007.mRNA mRNA downstream 207319 115335 ~ 128007 (-) True CI01000092_00116452_00128007
CI01000092_00409098_00411916.mRNA mRNA upstream 70272 408853 ~ 411916 (-) False CI01000092_00409098_00411916
CI01000092_00418628_00428488.mRNA mRNA upstream 79241 417822 ~ 428620 (-) True CI01000092_00418628_00428488
CI01000092_00506401_00508318.mRNA mRNA upstream 167158 505739 ~ 508524 (-) True CI01000092_00506401_00508318
CI01000092_00508717_00509840.mRNA mRNA upstream 170013 508594 ~ 510328 (-) True CI01000092_00508717_00509840
CI01000092_00579690_00648591.mRNA mRNA upstream 240609 579190 ~ 648591 (-) True CI01000092_00579690_00648591
TU345836 other upstream 716723 1055304 ~ 1055722 (-) True G304368
TU345843 other upstream 719744 1058325 ~ 1058864 (-) False G304369
TU345840 other upstream 719786 1058367 ~ 1058920 (-) False G304369
TU345842 other upstream 719786 1058367 ~ 1058864 (-) True G304369
TU345834 other upstream 748081 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333

Expression Profile