RNA id: CI01000092_00508717_00509840.mRNA



Basic Information


Item Value
RNA id CI01000092_00508717_00509840.mRNA
length 1451
RNA type mRNA
GC content 0.44
exon number 2
gene id CI01000092_00508717_00509840
representative True

Chromosome Information


Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 508594 ~ 510328 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATCTAGTTTCAAATGAAGGAGCCTCCTGCTTAGGGAACCTCAATTTTGGGGGAGGCAGCTACGACTTCGTTACCACAAGAGAGCTGCCTGCTTATAAGACCCATATCAGGGGGAGGCAGCTACAACCTTGGAACTTCAGCATTTCAAAAATGGGACCCACCTACCAAGGCTTGCCTCTAGGTTATCATATGGAAGCTGCCTGTTTCTTATAGGGAACCAACACAGAGGTGGAAGACAGCTCACCTTACCTCAGAGATCTCGAGTTCTCAAAAGCTGTGACAAAAGCTGTGAAAAAATCTTGCTTAGAGCCCATAATGGGAAAGGTACAACTTGTTCTGCCAGCCTCAAGGGGGGCTTCCTGAAGCTTACGCAATTTTAAGGAAGCCCATGCTTTGGTAACACTCGAGAGATTCCTACTTACTGTGGAAAGATAACGTGCTAGCGAAGAAGCAAGCCCTGTTGCACTGACAAGAGCCTCGTCGGATAAGATGGACAGTGCACTCGGATTAAAACCACCGCCGAGATTGATGCTGGACTCGAGCAATCTGGCAAAGACATGGAAGCCGTGGAAAGAAGAATTTCAGCTGTATCTTGATCTGACTTTGACAGAGGTGCCGGAAGGCATGAAGGTGAAACTTTTCTACTATCTGGTAGGAGAAACAGAGGAAAATTTGACGCTGCAGAAATGTGTCCAGATTTGTAGGGCTACCGAGTTGTCCAGAGAGAACAGCAAAACCATTGAAGGAAAAGCAGTGGAGGAAATTCAAGCTTTGAAACAGGTACCGACACACAAAACACTAAAGGATGACAAACGAAAAGCTGACATTACCTGCAAATTTTGTGGAAAGACACACGAAAGAGATAAACAAAAATGTCCAGCTTATGGGAAAACATGTAGGAAATGTGGAAAAGCCAATCATTTCGCTGCATTGTGCAAGTCCAAACGAGAACGTGGAAAAGTTGTGAATAATGTGACTGAAACTGAGAGTGAACAGTATGAGGATATCTGGAGCATCCCAACTGAGTCTGTGAACAAAGTCACAAAGAGCCTGGACAGGCAGCCCTGTCAACTGTTTGCAGGTATGTTGCTCGGGAAAAATTTAGTCAAATTTCAGTTGGACTGTGGGGCAATGTGTAACATTATCCCCATAAACTTTGTGAATCCAGATGTTCAAATAGAGAAAACGTACCAGGTGCTTGTTATGTACAACAAAAGTACACTGAAACCAGTAGGCAAATGCCATCTGAAACTGAGAAATCCACGTAACAAAAGCTGTACAGACTGGAGTTTATGGTCGTTGATGCACACTCTACAGTACCATTACTAGGAAGCAAAGCAGTCCAGGGGATGAAACTGGTTGAAGTACAATCTGAGAATATCCTGGTGGTGGATAATGTTGTGACAAAGACAAACAGAGACGACACAAGTGAACAATGGACAATGGAAGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU345570 lncRNA downstream 15963 492179 ~ 492631 (-) False G304126
TU345568 lncRNA downstream 15963 492300 ~ 492631 (-) True G304126
TU345516 lncRNA downstream 99727 406264 ~ 408867 (-) True CI01000092_00409098_00411916
TU345477 lncRNA downstream 170907 337015 ~ 337687 (-) False G304057
TU345590 lncRNA upstream 2775 513103 ~ 513417 (-) True G304146
TU345591 lncRNA upstream 3562 513890 ~ 514356 (-) True G304147
TU345596 lncRNA upstream 9508 519836 ~ 520585 (-) True G304152
TU345598 lncRNA upstream 11737 522065 ~ 522372 (-) True G304154
TU345511 lncRNA upstream 19025 529353 ~ 533252 (-) True G304085
CI01000092_00506401_00508318.mRNA mRNA downstream 70 505739 ~ 508524 (-) True CI01000092_00506401_00508318
CI01000092_00418628_00428488.mRNA mRNA downstream 79974 417822 ~ 428620 (-) True CI01000092_00418628_00428488
CI01000092_00409098_00411916.mRNA mRNA downstream 96678 408853 ~ 411916 (-) False CI01000092_00409098_00411916
CI01000092_00335844_00338581.mRNA mRNA downstream 170013 335326 ~ 338581 (-) True CI01000092_00335844_00338581
CI01000092_00271933_00272986.mRNA mRNA downstream 235608 271388 ~ 272986 (-) True CI01000092_00271933_00272986
CI01000092_00579690_00648591.mRNA mRNA upstream 68862 579190 ~ 648591 (-) True CI01000092_00579690_00648591
CI01000092_00847979_00851661.mRNA mRNA upstream 336970 847298 ~ 851661 (-) True CI01000092_00847979_00851661
CI01000092_01054403_01069241.mRNA mRNA upstream 544018 1054346 ~ 1069241 (-) True CI01000092_01054403_01069241
CI01000092_01086701_01097333.mRNA mRNA upstream 576076 1086404 ~ 1097333 (-) False CI01000092_01086701_01097333
CI01000092_01099061_01100011.mRNA mRNA upstream 587856 1098184 ~ 1100021 (-) True CI01000092_01099061_01100011
TU345836 other upstream 544976 1055304 ~ 1055722 (-) True G304368
TU345843 other upstream 547997 1058325 ~ 1058864 (-) False G304369
TU345840 other upstream 548039 1058367 ~ 1058920 (-) False G304369
TU345842 other upstream 548039 1058367 ~ 1058864 (-) True G304369
TU345834 other upstream 576334 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333

Expression Profile