RNA id: CI01000092_01054403_01069241.mRNA


Basic Information

Item Value
RNA id CI01000092_01054403_01069241.mRNA
length 1083
RNA type mRNA
GC content 0.47
exon number 8
gene id CI01000092_01054403_01069241
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 1054346 ~ 1069241 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTTTAAGAAAAATTTTATTTGGGAACACCTTCCATATATTCAACTACGAGTGGAAGAAATCATTCTTCAAATTTCGTGAGCCTTTCTCTGATTTGGCATATGCTCTGGAGACTGAGAGGGGAGGAGCCAGTGCTATTCAGATGGTGGTTCAGGCTCATATTATTAAGTACTTGCTCTTCAACAGGCCAGTGAACTCAACGTGCACAATGCAAAGTATGGTGGAGGTTGGGGAGAAGGAGCAGAGGAGGGCGCTGGTAGCCGCTCTAGCTGACATCTTGTGGACAGCTGGTGAGGAGCAGACAGCTACTATCTCCTTGGTCACATCAGAGCGCTGTTTCACCCCCCACCTTGACTACAAACTGGACAGCTTCACAGAAAGGTTTAAGGAAGAAGGAAGCCATGGAATCATACTTTTTCTGTACAGCCTTATCTTCTCCAGGACTATTGACAGGATACGAGCAGACTTCGATTGTACCACCACTCATCTTTTGCATTTGAGCTTGGGGAACTTTGTTTGTCGACAGGCTTTATTAAACCTGCTGTTGACCGGCCGTGCTACCCCTCATGTCTTCAACGGTACATCATTTAATGACGAGAAAGACAAACCGCTCGCCCACCCGCTCCACGGGGTTCTGACTCGCAGTCATGTTGGGTATCTGCTCTGGAACAGAGAACAAGTCAAGCATGCACAGCTCCCCCTGGTGGGCAGCATGCTGAAAACCCCCAAGCTGCCTATCTGGGTGTGCAACATCAATGGCACTTACAGTGTTTTGTTCAGCCCAAACCGTTTGCTGCTCTCTGACTGGAAAATGGAGCATCTTTTCCAGCTTTACTTCTACAATGGTCAACCAACTCAGCTCATCACAACAGTGCTCACCATAGATACACACTCTCATCACTGGGAGGCTGAAAATAATGACATTCAGGGAGACCTAGAGAAAAAGTTTCCATCTGTAGAGATGACCATTAGGACCAAGTGGGAGGGTGCTGTTATTGACTGGAATGGGACAGTGCCTTTTTTCTGAAGAGGTTTGAACCAGGGGCGCCTGATATCTAGCACACCTCTCCTGGCATTCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345738 lncRNA downstream 138855 915291 ~ 915491 (-) True G304274
TU345733 lncRNA downstream 144033 909925 ~ 910313 (-) True G304269
TU345732 lncRNA downstream 149658 904386 ~ 904688 (-) True G304268
TU345729 lncRNA downstream 152714 901200 ~ 901632 (-) True G304265
TU345728 lncRNA downstream 159922 893742 ~ 894424 (-) True G304264
TU345853 lncRNA upstream 2169 1071410 ~ 1071997 (-) True G304378
TU345856 lncRNA upstream 7057 1076298 ~ 1076529 (-) True G304380
TU345833 lncRNA upstream 15272 1084513 ~ 1085394 (-) True G304365
TU345920 lncRNA upstream 147756 1216997 ~ 1217247 (-) True G304432
TU345921 lncRNA upstream 148613 1217854 ~ 1218144 (-) True G304433
CI01000092_00847979_00851661.mRNA mRNA downstream 202685 847298 ~ 851661 (-) True CI01000092_00847979_00851661
CI01000092_00579690_00648591.mRNA mRNA downstream 405755 579190 ~ 648591 (-) True CI01000092_00579690_00648591
CI01000092_00508717_00509840.mRNA mRNA downstream 544018 508594 ~ 510328 (-) True CI01000092_00508717_00509840
CI01000092_00506401_00508318.mRNA mRNA downstream 545822 505739 ~ 508524 (-) True CI01000092_00506401_00508318
CI01000092_00418628_00428488.mRNA mRNA downstream 625726 417822 ~ 428620 (-) True CI01000092_00418628_00428488
CI01000092_01086701_01097333.mRNA mRNA upstream 17163 1086404 ~ 1097333 (-) False CI01000092_01086701_01097333
CI01000092_01099061_01100011.mRNA mRNA upstream 28943 1098184 ~ 1100021 (-) True CI01000092_01099061_01100011
CI01000092_01110360_01113717.mRNA mRNA upstream 41038 1110279 ~ 1115228 (-) True CI01000092_01110360_01113717
CI01000092_01122961_01135673.mRNA mRNA upstream 53581 1122822 ~ 1136003 (-) True CI01000092_01122961_01135673
CI01000092_01186569_01191243.mRNA mRNA upstream 116880 1186121 ~ 1191533 (-) True CI01000092_01186569_01191243
TU345834 other upstream 17421 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345950 other upstream 162659 1231900 ~ 1232292 (-) True G304459
TU347441 other upstream 1655353 2724594 ~ 2724944 (-) True G305772
TU347691 other upstream 2608633 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 3427173 4496414 ~ 4505953 (-) True G306679

Expression Profile