RNA id: CI01000092_01122961_01135673.mRNA



Basic Information


Item Value
RNA id CI01000092_01122961_01135673.mRNA
length 1288
RNA type mRNA
GC content 0.47
exon number 4
gene id CI01000092_01122961_01135673
representative True

Chromosome Information


Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 1122822 ~ 1136003 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACATGAGATTGTGTTAACTAAAATGTCCATAATTTACCACATTTTAAAAAAGATTATGGAAACATTCAAATACATTCTCTCAGCAAAGAATGTAAGTAACCTAGCAACCACCCAAAACACCAAGGCAACCACATTGCAATGTGCAAAAAGAACTTGTGCAATGTGCAATGTGCAAGTACCCACTCTGCCATGCTGAGGGAATAACTGCCTAAATGGCTAAGATAAGCAAAAAGAAGGCTCAACGGACTTAGATGCCGTAGACCAATCCATCTCTCAGGTCAAACACAGGGCTGTCAGTGACACTATTCCCTAAGGCCACAACCTAGGCCCATGCCCTATGCAAGGAAGAACCCTTACCGGGACGAAACAGTGTCTGCCCCAGGGCAGAGCTCAAGGTACCTGAAGATTGTTCGGCCATTGGAGACTCATGCTCTGCAGACGGTCCGTACTTCCCACCACATTTCTGCAGCTACTTGGCTCTCCTTGTTAGCCATATCTTCCATCTACCTGATTCTCTTTCTTCAGACCACCTGGGGTCGAAAGCTTGATGAATTTCCTTGCGAATCCCATCACAGTCTCAAGCTCAGTGTGGCCTACAAAATCATCCACTGTTCATCCATTGTAGTCTTCATGTTTGTGCTAATGTCTCTGGTTTTTCTTTATTGGAAGACTCTGCAAAAGATCCGTCAAACTCAGTTGTCCACACAAACCACATCTAACAGCCATAAGTTTAACAAGTCTAAACGCAACACTCTTGTTCTAGTGGTCGTTTTCTGCATGTACTTTGTGCCCTATCATCTGACTAAAAGGCTTCAGTCATTGGACAAACCTGCATCACGCCTCAGACTGAAAGGCTTCAGGTCTCAGGAAAAATTATGTCAGGCCCTGAAACTTGCGGGGACCAACCACACTGACTTAGAAGAGGTGTCGATGATGAGCAAAAATGGACTACCTCCCGAATTACATACGGTGGTGGGATTAGTAGAGACGCCCCCTCGGAGCTCCGAAGGAAGTCGGGCACAAGATGGCATGGTGTGCACAGACCTCCCTTGGGAGGGGTCGCTCTCAAGGGCTAGGGCTGAAAGGTATCAGGTTTTCTTTTTGGTTGCCTTCAAGGAGATCTCCCCTTGGGCAGCCAGGACTGAGTGAACCACCCACCCTCCTATCTTTATGATGGGAGCTTGAGTGGCCACACTTACTTTTTGTTCCTCCCTCCTGAAACTTGGCCCTGGACCTGGCCTTGGGCACTTTGGAGAGGTAATGTATAAATCTCTTTGCTTGCAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU345833 lncRNA downstream 37428 1084513 ~ 1085394 (-) True G304365
TU345856 lncRNA downstream 46293 1076298 ~ 1076529 (-) True G304380
TU345853 lncRNA downstream 50825 1071410 ~ 1071997 (-) True G304378
TU345846 lncRNA downstream 61494 1060641 ~ 1061328 (-) True G304372
TU345845 lncRNA downstream 62213 1059859 ~ 1060609 (-) True G304371
TU345920 lncRNA upstream 80994 1216997 ~ 1217247 (-) True G304432
TU345921 lncRNA upstream 81851 1217854 ~ 1218144 (-) True G304433
TU345924 lncRNA upstream 85863 1221866 ~ 1222070 (-) True G304436
TU345904 lncRNA upstream 89071 1225074 ~ 1225310 (-) True G304423
TU345949 lncRNA upstream 95111 1231114 ~ 1231434 (-) True G304458
CI01000092_01110360_01113717.mRNA mRNA downstream 7594 1110279 ~ 1115228 (-) True CI01000092_01110360_01113717
CI01000092_01099061_01100011.mRNA mRNA downstream 22801 1098184 ~ 1100021 (-) True CI01000092_01099061_01100011
CI01000092_01086701_01097333.mRNA mRNA downstream 25489 1086404 ~ 1097333 (-) False CI01000092_01086701_01097333
CI01000092_01054403_01069241.mRNA mRNA downstream 53581 1054346 ~ 1069241 (-) True CI01000092_01054403_01069241
CI01000092_00847979_00851661.mRNA mRNA downstream 271161 847298 ~ 851661 (-) True CI01000092_00847979_00851661
CI01000092_01186569_01191243.mRNA mRNA upstream 50118 1186121 ~ 1191533 (-) True CI01000092_01186569_01191243
CI01000092_01201434_01205306.mRNA mRNA upstream 63871 1199874 ~ 1206532 (-) True CI01000092_01201434_01205306
CI01000092_01266540_01267541.mRNA mRNA upstream 130355 1266358 ~ 1268479 (-) True CI01000092_01266540_01267541
CI01000092_01270604_01273133.mRNA mRNA upstream 133742 1269745 ~ 1273133 (-) True CI01000092_01270604_01273133
CI01000092_01307631_01315805.mRNA mRNA upstream 171312 1307315 ~ 1315805 (-) True CI01000092_01307631_01315805
TU345834 other downstream 25904 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 63902 1058367 ~ 1058920 (-) False G304369
TU345843 other downstream 63958 1058325 ~ 1058864 (-) False G304369
TU345842 other downstream 63958 1058367 ~ 1058864 (-) True G304369
TU345836 other downstream 67100 1055304 ~ 1055722 (-) True G304368
TU345950 other upstream 95897 1231900 ~ 1232292 (-) True G304459
TU347441 other upstream 1588591 2724594 ~ 2724944 (-) True G305772
TU347691 other upstream 2541871 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 3360411 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 3668392 4804395 ~ 4865973 (-) True G306792

Expression Profile