RNA id: CI01000092_01201434_01205306.mRNA



Basic Information


Item Value
RNA id CI01000092_01201434_01205306.mRNA
length 3794
RNA type mRNA
GC content 0.36
exon number 2
gene id CI01000092_01201434_01205306
representative True

Chromosome Information


Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 1199874 ~ 1206532 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACTTATTACAAACCATGCAATTTGATCTTTCATATGTCTTAAAAAATTTCTTATTAGCTTAGTTTCTATCCATGTATTTTTATGCACATGTTGGGATATCACATAAAAAATGCTGGATGGAAACTCCAAGATGCACATAACTTCTAAAAATTTGTATTAAAAAAAACTTTTGCGCTCAATTGAGGGGGATACATTTTTTTTATCCAATAAGAAAACATGCATAAACTACAATGGAAAATATTTACCAAATAAATCCTTGACGCACAATAAAAAAAACTCACGTGACTTCAACAGTGGATGTGACTGGATAACTGAACTAACCAGCATACCAATTCCATTGCATAGCATCTCAAATGTTGGTTTGATCCTTCTGAAGCTAAAGTCTGTCATCAAAATGATTTGGTTTAATTCTCTTCCAGAAGCATTTCACACTATTGCTTTCCCAAACACCTGGCATCCGAATGCAAGATATTTATGCAAGTCATTTATGATGTAGGAAAAAGAGCTACATGGCTTCCCCGATTGCAGCAACTTTCATTTTTTATTACAGATATTTTGAACCAATTTCCCAGGAAGTGACAATTTTGTTCCCTTGAACACATGGGATGGAAATGCTGCTTTATTCGCAAATGTTTTATGCAATATTCCCATTTTGCGGCCAAGTTAAATTCACAACTTTGGATGGAAACATAGCTAGTGAGAATTAACAGAGGTTTAGCTCTAATCATTGTTGATGTTTTATTGAAAATGTTTTGCCATCGTCACCAATATGGTGATTAGTGTTTCCTTTAGTTGGGCACTTGGCCCTGGATTATTTTATGTTTCTGTTTTTCTGGCTGCTGTAACTGTGTGTTTGTAAGGTACATTTGCTATGGCAAGGAAAATCAAGCCTGATTCATTAATCACATTCAGAGTCTAATCTTTGATTCTAAAAGTGATGTGATGATTAACTTCACATAATTAATTACAGTAACTCTGAGAAATTACATCAGTAGATCACTTAGTGTTATGATAATCATATTCTGAAAGATTGTATCTGGTTTTGCAATGTCGCCCAGAATGCATTGCTTCCTACAGTATTACTGTTATAATGGAAAACATTGTTACTGTCAGAATTTGGATGTTTTCACAGCAGTTTTTCACAGTAGATTGCAAAGTTTGTATATGAGATTGAAAATTAGAATGTTTTCTTCTCATCAGTCTCTGTTTCTCTCTTGCTCATCTAGATGGAGTCTGCAGTGCCTGCAACCATCTTCACCACTTCCCCAGTTGATAAAATTAAACCAAACATAACCAACACCACAGAAGTTTCCTGTGAATTTTCAGAGGTCTCTGCCCACCCTGTTTTCATATTTAGCTACTCACTAGTGTTTCTTGTCAGTGTAGTGCTGAATTGCATCACAATGCGTGTGTATTTCTGCACTAATCAGCGTGTCCAGTCCAGTGTCACGGTCTACATGAAGAACCTGGCCACAGCTGACTTCTTCCTTTGCCTTTGTTTACCTTTGCGCATTGCCAACAGTGCTAACTATTCCATGACGATACATAATATTTACTGCAGCTTTGGAGCAACAGCCTTCTATTTAAACATGTATGCAAGCATTCTCTTCATGGACTTTATTGCTGCAAACAGGTACCTGAAGATTGTTCGGCCATTGGAGACTCATGCTCTGCAGACGGTTCGTACTGCCCGCCACATTTCCGCAGCTACTTGGCTCTCCTTGCTAGCCATATCTTCCATCTACCTGATTCTCTTTCTTCAGACCACCTGGGGTCAAAAGCTTGATGAATTTTCTTGTGAATCCCATCACAGTCTCGAGATCAGCTTGGCCTACAAAATCATCCACTGTTCATCCATTGTAGTCTTCATGTTTGTGCTAACATCTCTGGTTTTTCTTTATTGGAAGACTCTGCAAAAGATCCGACAAGCTCAGTTATCCACACAGACCACATCTAACAGCCATAAGTTTAACAAATCTAAGCGCAACATGCTAGTTCTAGTGGTAGTTTTCTGCGTGTGCTTTGTGCCCTATCATCTGGTGAGACTGCCTTACGTGTTCAGCAATGATTGTACAACAGCTCAAGCATTAAACATCCTGAAGGAACTGACTATCTTGATTTCAGTGCTAAATGTCTGTTTCGATCCTCTTATATACTTCATCTTCTGCAAGGCCTTTAGAGCCCAGCTCAGGAAGAAGAAAGATTTGCAAAGATCCAGTGAAGATCAAACATGAAACATATACTGTAATTTACTGAAATATCTGTAATTTATATATTTCATTTATACTTTAAAAATTGTTTTGTCAATGTCAAAAGATCAACAATTTTGTCTTTATATGAATGTGAGATGAAGACTACTCATGATAGTTTTCTATAATAAGTGTTTTAATTATGTATGGTTTGGGTCACCCCTCTCAGTGTATTTCGGCACGTTGACCTGCGGAGAATCCTGATGCTCATTGGCTGCAGCCTTTGTAGATACACTAGTAGTGTAACAATCACCAGCTGGAGTGCCCTTGATAGCCACCAGAGGGAACTCCACCCCCGACTATTGCCACACCATCAAGGATTCACCCTGCATCCCAATGTGCATACTATCTCCGCTCTAAATAGAATTGAATATTACTAATGTCACACACTATTTAGGATGGATAGTATGCACATTGAGACGCAGGCTCAATTTCCTATGTTTCATTAGCCATAATTGTTCTCAGGTGTTTGTCATTAGCATCATCACTTCTACCTATAAAAGCCAGATTCTCTCTTTTACTTATTGCTAGTTCATTCTAACATTTGTAGTGCAGTATTTATTAAAAGGGTAATCCACAAGCATAATCTAAAAACAGGTAGAAGGTCAAAACCAGAGGGCAAACAATCCAAGTCAAAACAGAGTCCAAGATACAGGCAAACAAAAAAAATCCTGGGAACATGCAGTGAACAAAAAGACCAAGAAAATCAGGAGAGTGCTAAGAAATGCAGTACAAACATTAACAAGATCAGTAACACTTTACAGTTAGGTTCATTAGTTAAACATTACTTAATGTATTAACCAATATGAACTAACCATGAGCAATACATTTGTTACTGTATTTACTAATCTACGTTAATGTTAGTTAATGAAAATACAGTTGTTCATTGCTTGTTCATGTTAGTTCACAGCGCATTAACTAATGTTAACAAGACTTTAATAATATATTAGTAAATGTTGAAATTAACATTAACAAAGATTAATAAATGCTGTAAAACTGCAGTTCGTTATTAGTTAACTAATGAAACTTGTTGTAAAGTGTTACCACAAGATCTAGCAATGAGTAAATGAGAGAACCTAGCTTTTATAGATAGAGGTGAAGATGCTAATGACAAACAGCTGAGAACAATCATGGCTGAGGAACCCAGGCAATGAACTATGGGAAATTGAGTCCTTGATGGTGTGGCAATAGTCGGGGTGGAGTGCCCTCTGGTGGCTATCAAGGGCACTCCAGCTGTTGATCGTGACAAGTAGCTAGTGGCTTGCAATGGTGTTCTGAAATGAGGAAGCCTCACTGTTTTGTTGTTGTTTGTGAATGTTTCAGTTACACTTAATACTGACACATTCTTTTTTCATATTAAATAAATAAACATTACTTCCTCTTTAAAAAAAAACAACCAAAACAATTCTGTTTTGTATTTTTACAATAATAATGCAATTATTGTATTATTTATTAAAACTAAGTATATTTCTCAAGTTTTCTTATCATTTTTAAATTTATTCAAAAATAGTGAACATAAGAACGCTGTATCAACTGATTAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU345833 lncRNA downstream 114480 1084513 ~ 1085394 (-) True G304365
TU345856 lncRNA downstream 123345 1076298 ~ 1076529 (-) True G304380
TU345853 lncRNA downstream 127877 1071410 ~ 1071997 (-) True G304378
TU345846 lncRNA downstream 138546 1060641 ~ 1061328 (-) True G304372
TU345845 lncRNA downstream 139265 1059859 ~ 1060609 (-) True G304371
TU345920 lncRNA upstream 10465 1216997 ~ 1217247 (-) True G304432
TU345921 lncRNA upstream 11322 1217854 ~ 1218144 (-) True G304433
TU345924 lncRNA upstream 15334 1221866 ~ 1222070 (-) True G304436
TU345904 lncRNA upstream 18542 1225074 ~ 1225310 (-) True G304423
TU345949 lncRNA upstream 24582 1231114 ~ 1231434 (-) True G304458
CI01000092_01186569_01191243.mRNA mRNA downstream 8341 1186121 ~ 1191533 (-) True CI01000092_01186569_01191243
CI01000092_01122961_01135673.mRNA mRNA downstream 63871 1122822 ~ 1136003 (-) True CI01000092_01122961_01135673
CI01000092_01110360_01113717.mRNA mRNA downstream 84646 1110279 ~ 1115228 (-) True CI01000092_01110360_01113717
CI01000092_01099061_01100011.mRNA mRNA downstream 99853 1098184 ~ 1100021 (-) True CI01000092_01099061_01100011
CI01000092_01086701_01097333.mRNA mRNA downstream 102541 1086404 ~ 1097333 (-) False CI01000092_01086701_01097333
CI01000092_01266540_01267541.mRNA mRNA upstream 59826 1266358 ~ 1268479 (-) True CI01000092_01266540_01267541
CI01000092_01270604_01273133.mRNA mRNA upstream 63213 1269745 ~ 1273133 (-) True CI01000092_01270604_01273133
CI01000092_01307631_01315805.mRNA mRNA upstream 100783 1307315 ~ 1315805 (-) True CI01000092_01307631_01315805
CI01000092_01317932_01336911.mRNA mRNA upstream 111242 1317774 ~ 1338546 (-) True CI01000092_01317932_01336911
CI01000092_01352766_01386659.mRNA mRNA upstream 146213 1352745 ~ 1386659 (-) True CI01000092_01352766_01386659
TU345834 other downstream 102956 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 140954 1058367 ~ 1058920 (-) False G304369
TU345843 other downstream 141010 1058325 ~ 1058864 (-) False G304369
TU345842 other downstream 141010 1058367 ~ 1058864 (-) True G304369
TU345836 other downstream 144152 1055304 ~ 1055722 (-) True G304368
TU345950 other upstream 25368 1231900 ~ 1232292 (-) True G304459
TU347441 other upstream 1518062 2724594 ~ 2724944 (-) True G305772
TU347691 other upstream 2471342 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 3289882 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 3597863 4804395 ~ 4865973 (-) True G306792

Expression Profile