RNA id: CI01000092_01802304_01802591.mRNA



Basic Information


Item Value
RNA id CI01000092_01802304_01802591.mRNA
length 3445
RNA type mRNA
GC content 0.41
exon number 1
gene id CI01000092_01802304_01802591
representative True

Chromosome Information


Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 1800795 ~ 1804239 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATAGTTTTTTATCTGCAGAGTGTCTTTTTTAAAACGATACTAATATAGGCCTGTATTCCAAAGCATTCATGAATTACAACCATTAAAGGGGTAATGAATTGAGAAGTCAACTTTTCCTTGAGCTTTTGATATATAAGAAGTCATCGTACTATAAGAATATCCTGTAAGTTTCAGAACTGAAAACTTCCTTGTTAGTCCAATAAAAGCTTTTATTGACACCAGGCTCAGTGAACGACTTGTCCCACAATGTGCCTATCATAGGTGAAACCTCGCCTCCACAGAAGAAATCAAGGCCTATTTCATCTTTGCAACATTAGCATGTTGGTGGCACGTTAGTGAGATGACGAGGAGAGAAGAGCGATACAGGACTAAAAATAACATTACCTTTCAATGGATCCTAACGCTAGGAATATGGTTATTTATTTTCAACAATGTGAATGTCTCAGTTAAGCATTATTTATTTGTATTCAGAACATTTCACTGTGGATTCTTTGGTAAATCAATCACATTTCAGCACAGGCTTTGCAAAAAAGACTTTTACGATATGGACTCGACAGTAATGCAACAACATGTAAGTAACTGTGTTAAATCTAATGCCTGATCTGATATGTAATGATTTATGTACAGTCAGATGTTCTTTGTCTGTGTGTCAGTAAATCAAACCATTGACTAAACAGTTAGCTTCACGTTTTTTCTCTTAGTTGGATGAAAATAATTTGTTACTTAAACGGTGATTAAATTAGATATAGAAAGGGATCAAAGAACGCTCTCTTTACAATTCCTGGAGCTGTCAATCAAACAGCGCAAGTTTATCAGTGACTGAGTTCTGGACTCGCACCAAAACTCTAATTTTATTCAACAAATCTCTTAGTTATATCGTGTTTACACTGTTAGTTATGATGAAAGCATTCATTGGTGTGCAGAAGTTGAGTTGCAATGAGGAGATCACTGCTTTCATGAGCTCAACAACATGTCTGTGATCGGCTACAATGTTCATCACTGCAACCTTTCATGCCACTAAATATAATGCCATAGATCTAAATGTAATGCTATAATCAACACTTTTCATGATTAGTTAACCTTGAGAGCTGTAATTGTAAAAACATGCTAAAAGTTTTTGAGAGAGTAATACTTAGCTATTTCATTGGCAAACATGTTAGCCAATCACAGCACTGGGCGTTTACACTGAAGTCTCACAGCAGACACGCCCCTTAAAACAGAGCGTTCAAATAAGAGGGCTAAAATCAGGGTAGGAAAAATGCATTTTATTTTTAAATTAGGACAATTTTTTGATGTAAAAAGCATACTTACATTATAAGTGTACCCCAGGAAACATTATAAAACAATAAAACAATGCAGTTCATCACCGTTTAATTTTCATGTCTATGCTCAAAAAGGGGGGTTAACAGTTAACAAGTGCATTTTCAATGTAATAAACTTTTGCTGTGTTTTAAAGAAGTGCACTTATTTTTGTCATGAATGATCCACTGACAGCAAGTAGTTCAAACCCAAGTGCAGTTTATTGAACAAAACAGATACTGCGGACTTGGGCTGTGAAACAGAGAATGAGACCATGGATCGTGGAACAGAGACAGGCCTGGACTGCAGAGCAGAGGTGAGCCTGGACAATTGAGCAGTGGACGAGACCATGGAGGATCAGGTGGATCTGGACTGTAGAGCAGTGGATGAGACTATGGACCGTAGAGCAGTAGACAAGACCATGAAGGATCAGTTAGACCTGGACTGTAGAGCAGTGGACAAGACCATGGGCTGTAGAGCAGTGGACAAGACCATGGAGGATCAGGTGGACCTGGACTGTGGAGCAGTGAACGAGACAATGGACTGTGGAGCAGTGGACGAGACCATGGACTGTGAAGCAGTGGATGTGACCATGGAGGAGAAGGTGGACACCAGGGGGAGCTGGTGGAGATTGTGATCATCTCAACAGATCAGAAGACCACTGTCTGTGGCTGTGACAGGGATCATGAGCAAGAGATGTTGTGGATGCTGCTGCCTCTGGAGAAGTGTGTGTGGCCCACACAAACAGGATAGCAGTGGCAATTACCAGAAGCACCACAGAGAGTGGAATGACCTCTGGGATCACTGGACTTGGGACCACCGAGCTAAGGAGCTGCGAGACCACTGGACTGGGGAGCGCTAGCTCGTGTGCAATGGCAGGCATGGGACAGGCCTCTGCAGCCGGAAGCATGATGTCCCTAAAAAAAAATTATATTTGTGAGACGGCAGGAAGTTAAGGTGTGAGAAGACTCTGGCCATGTTGGCTCTGTCACAGTGTTCTGCAATTCCCACAGTGGAAAATGAACTGCTCAGCAACAAGGCATACTCAATATATTCTGCTAAATTCCCCACAACATCACTCTCAGGCAGTTAGTTCATGAAATCACTAAGTACATTCCAAAAGATGCCTTTTAATGCAATATCACACAACAAAACCACACCAAACTCCTCAACATACTCCTTTATGGTACGATTACCCTAGCTTAAAGGAGCAACTGCTGGGTTCATGGTTACTGTTGTGTATTCTGTCACAAAGGATCCACTGACTGTGAGATAGTCCGAACTCAAGTGCAGTTTATTGAAAAAAAAAAAAAAAAAACAGATAAGAAACTAACACAACATGATGATGACTAGACCTGACAAGCACAGACTTGAACTTGGTTTGAACACACATGAACTTGACTTAACCACGAGCATGAACATAAGACTCACCAACAGCAAATGAAACACAAACAATACAGGAAAAGGAAACATGGCAAACATGAGGGCTTAAACACATGGACATGGGGAAACACGTGACAAGAGCAACCAATGAACAGATGGAACTAATGAAACAAAAACCACTGTTACCGTGACTCATAAAACAAAGGAACCAATGAAAACAAGACACATGAACAGCAGAAGCACATGACAGGCTCACATGAGGGGACAGGTAATCACATGTTGGGTTTTCATGTTTTATGTGGACTTTCCATAGACATGATTTTTAAGCCCTAAGGAGGATCCTGAAACACAAGACACCAGTGAGTCCAAAGGTCTTAAAAGTGATCATATCTCTTGGTTTAAACAACATAAATTATACATCAATGGCAGTGTTGCAGAGATTACTGGGAAGGGTGCTGGGGCAGCGGAAAGTACTTTTCCCAAGTACTTTTTCCATAATTAAGATACTGGAGATTAATTATAAGGAGGAGCTACCAGAAAGGGAGAAATGATTTTTGAGGGAATTAAATGAAATGATCAATGCGTTGGGAAAGGGAATGGATTATTTGCCGTATTGGAGGTTTGAGACAGAGGGGGATTTGATACACTGGGTGAAGGGAATGGGAGAGGCAATGCTTGAACACTGAGATGAGAGGGGCATCAGGGGAGCCAAAGAACAGTTAGAACTATGATGAACCACTCAAAATTAGTGAATTTAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU346059 lncRNA downstream 78231 1722334 ~ 1722564 (-) True G304564
TU346055 lncRNA downstream 82422 1718140 ~ 1718373 (-) True G304560
TU346039 lncRNA downstream 104414 1695808 ~ 1696381 (-) True G304544
TU346019 lncRNA downstream 171411 1629084 ~ 1629384 (-) True G304524
TU346015 lncRNA downstream 189440 1611080 ~ 1611355 (-) True G304520
TU346251 lncRNA upstream 53448 1857687 ~ 1857911 (-) True G304741
TU346252 lncRNA upstream 54093 1858332 ~ 1858539 (-) True G304742
TU346254 lncRNA upstream 57620 1861859 ~ 1862148 (-) True G304744
TU346256 lncRNA upstream 59297 1863536 ~ 1863827 (-) True G304746
TU346235 lncRNA upstream 62766 1870016 ~ 1870055 (-) True G304725
CI01000092_01588502_01599337.mRNA mRNA downstream 201458 1588473 ~ 1599337 (-) True CI01000092_01588502_01599337
CI01000092_01562366_01575276.mRNA mRNA downstream 225519 1562048 ~ 1575276 (-) True CI01000092_01562366_01575276
CI01000092_01488880_01522758.mRNA mRNA downstream 278037 1488880 ~ 1522758 (-) True CI01000092_01488880_01522758
CI01000092_01451469_01485752.mRNA mRNA downstream 315043 1451469 ~ 1485752 (-) True CI01000092_01451469_01485752
CI01000092_01352766_01386659.mRNA mRNA downstream 414136 1352745 ~ 1386659 (-) True CI01000092_01352766_01386659
CI01000092_01866991_01869504.mRNA mRNA upstream 62662 1866901 ~ 1869504 (-) False CI01000092_01866991_01869504
CI01000092_01908289_01908682.mRNA mRNA upstream 103072 1907311 ~ 1908691 (-) True CI01000092_01908289_01908682
CI01000092_01964262_01964863.mRNA mRNA upstream 159840 1964079 ~ 1964863 (-) False CI01000092_01964262_01964863
CI01000092_01981235_01981861.mRNA mRNA upstream 176224 1980463 ~ 1981861 (-) True CI01000092_01981235_01981861
CI01000092_02026073_02027161.mRNA mRNA upstream 221823 2026062 ~ 2027525 (-) True CI01000092_02026073_02027161
TU345950 other downstream 568503 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 703877 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 741875 1058367 ~ 1058920 (-) False G304369
TU345843 other downstream 741931 1058325 ~ 1058864 (-) False G304369
TU347441 other upstream 920355 2724594 ~ 2724944 (-) True G305772
TU347691 other upstream 1873635 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 2692175 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 3000156 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 3349429 5153668 ~ 5154133 (-) True G306902

Expression Profile