RNA id: TU346280


Basic Information

Item Value
RNA id TU346280
length 56
lncRNA type sense_over
GC content 0.45
exon number 1
gene id G304767
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 1964432 ~ 1964487 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGGTGAAGTAAATGATGAGGACACTCTGTCTGTGTGTTCTGAGACAGTTGCTGAGGATTTTGCACAACCTGCCACTGAAACTGAGGCCTCTACCTCAATGGGCTTCAGAAGAAATGTGAACAAAGTGGAAACAGACTCAGTCAGGGCCCTTTACAAAAGGAGCCTTGAACTGGACTGAACACTGAAGGAGCTAGACTGTGAGCTGAGGAGACTCCAAATTAAAAAAATAAAACTGGAGATCAAACAGCTTGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346264 lncRNA downstream 48588 1911977 ~ 1915467 (-) True G304753
TU346262 lncRNA downstream 64577 1899180 ~ 1899478 (-) True G304752
TU346261 lncRNA downstream 66018 1897816 ~ 1898037 (-) True G304751
TU346260 lncRNA downstream 67077 1896742 ~ 1896978 (-) True G304750
TU346233 lncRNA downstream 68068 1894726 ~ 1895987 (-) True G304723
TU346281 lncRNA upstream 744 1965231 ~ 1965483 (-) True G304768
TU346284 lncRNA upstream 8295 1972782 ~ 1977219 (-) True G304769
TU346294 lncRNA upstream 40259 2004746 ~ 2005197 (-) True G304777
TU346315 lncRNA upstream 84638 2049125 ~ 2049332 (-) True G304795
TU346379 lncRNA upstream 160903 2125390 ~ 2161014 (-) True G304853
CI01000092_01908289_01908682.mRNA mRNA downstream 55364 1907311 ~ 1908691 (-) True CI01000092_01908289_01908682
CI01000092_01866991_01869504.mRNA mRNA downstream 94551 1866901 ~ 1869504 (-) False CI01000092_01866991_01869504
CI01000092_01802304_01802591.mRNA mRNA downstream 159816 1800795 ~ 1804239 (-) True CI01000092_01802304_01802591
CI01000092_01588502_01599337.mRNA mRNA downstream 364718 1588473 ~ 1599337 (-) True CI01000092_01588502_01599337
CI01000092_01562366_01575276.mRNA mRNA downstream 388779 1562048 ~ 1575276 (-) True CI01000092_01562366_01575276
CI01000092_01981235_01981861.mRNA mRNA upstream 15976 1980463 ~ 1981861 (-) True CI01000092_01981235_01981861
CI01000092_02026073_02027161.mRNA mRNA upstream 61575 2026062 ~ 2027525 (-) True CI01000092_02026073_02027161
CI01000092_02039063_02039980.mRNA mRNA upstream 74353 2038840 ~ 2040333 (-) True CI01000092_02039063_02039980
CI01000092_02043716_02044633.mRNA mRNA upstream 78904 2043391 ~ 2044672 (-) True CI01000092_02043716_02044633
CI01000092_02055330_02056247.mRNA mRNA upstream 90530 2055017 ~ 2056286 (-) True CI01000092_02055330_02056247
TU345950 other downstream 731763 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 867137 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 905135 1058367 ~ 1058920 (-) False G304369
TU345843 other downstream 905191 1058325 ~ 1058864 (-) False G304369
TU347441 other upstream 760107 2724594 ~ 2724944 (-) True G305772
TU347691 other upstream 1713387 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 2531927 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 2839908 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 3189181 5153668 ~ 5154133 (-) True G306902

Expression Profile