RNA id: CI01000092_02043716_02044633.mRNA


Basic Information

Item Value
RNA id CI01000092_02043716_02044633.mRNA
length 1282
RNA type mRNA
GC content 0.32
exon number 1
gene id CI01000092_02043716_02044633
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2043391 ~ 2044672 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCCTCAGGTCAATAAATCCATCCTTTGCTTAATGGAAAATGGAAAATGGAACGTATTTTTACTTGATGTTGTTTGACAATATTGGGTACATAAGATATGCTTTCTTCAGTTTGGGAATTATTCTATACTGTGCTATTATATTCTTTAATGCCTTTATAATTCTTGCAATTTTTCTTGAAAGGACATTACACCAGCCCATGTACATTCTGATTTCATGTTTGTCCTTCAACTCTGTGTTTGGAACAGCTGCTTTTTTCCCAAGGTTACTGGCAGACTTGCTGTCTGATACACACTCGGTGTCCCGTGAAGCATGTCTCTTACAGGCTTTTGTCATTTATTCATATGCATCAAATGAAAATACAATATTAATGTTAATGGCATTTGACAGATATGTAGCAATCTGTAAACCTTTACAATACAACAGCATAATTACTCCCAGGATTTTATCTGTTTTAATAGTTATAAGCTGGATTTATCCAATGCTTTGCGTTGGCATTGCTGGTATTTTAAATGCCAGACTGACTATGTGTGGTAACAAACTTTGGAAGGTGTATTGTCACAACTGGGAAATTGTCAAGCTTTCTTGTTCAAACACTATTATTAATAATGTTTTTGGCTTTTTCATAGTGACCACAACTGTTATCATGCCTTTAAGTTTAATATTATATTCCTATGTTAAAATTCTGATCATTTGTACAAAAAGCTCACCAGAGTTCAGGAGAAAAGCATTTCAAACTTGTATTCCACACATGGTGATCCTTTTAAATTTCTCTATTGCTATTTTTTGTGAGGTCACTTTGAGTCGGTTTGTGACTTTGGATCTCCCTATAGGGCTCTCAATTATTCTTTCACTGGAGTTTCTTGTTGTACCACCCATCCTGAATCCTATTGTTTATGGTCTGAATTTTCCTGAAATTCGCAAAAAAATTATATGTATTATCAAAGCATCCAAATAGCTGTGTTTTTGATGTAATAGAGAATGTTTATGATATTCAGCAAAAAATCATTGTTTAATCAAACATTGTTTTATCTCTTACCATGCTTTTTAATCATATACATTACATGTTATCTGTAAATTTAACATTCCCAGTAAATATTTGACACAATTATACATTTATAAACCTATACATATAATTTATTATTTAGCCTGTCTAAATGAGTGAACACTGTTACTGCATTCCTGACAGGGGTCAGACAGACCCTAAGTCACCTCTCAGATACCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTTTCCCTAGTTCTTATACAATAAA

Function

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346294 lncRNA downstream 38194 2004746 ~ 2005197 (-) True G304777
TU346284 lncRNA downstream 66172 1972782 ~ 1977219 (-) True G304769
TU346281 lncRNA downstream 77908 1965231 ~ 1965483 (-) True G304768
TU346279 lncRNA downstream 78747 1964055 ~ 1964644 (-) False CI01000092_01964262_01964863
TU346315 lncRNA upstream 4453 2049125 ~ 2049332 (-) True G304795
TU346379 lncRNA upstream 80718 2125390 ~ 2161014 (-) True G304853
TU346428 lncRNA upstream 187847 2232519 ~ 2232949 (-) True G304895
TU346431 lncRNA upstream 194065 2238737 ~ 2239195 (-) True G304898
TU346433 lncRNA upstream 195733 2240405 ~ 2241173 (-) True G304900
CI01000092_02039063_02039980.mRNA mRNA downstream 3058 2038840 ~ 2040333 (-) True CI01000092_02039063_02039980
CI01000092_02026073_02027161.mRNA mRNA downstream 15866 2026062 ~ 2027525 (-) True CI01000092_02026073_02027161
CI01000092_01981235_01981861.mRNA mRNA downstream 61530 1980463 ~ 1981861 (-) True CI01000092_01981235_01981861
CI01000092_01964262_01964863.mRNA mRNA downstream 78528 1964079 ~ 1964863 (-) False CI01000092_01964262_01964863
CI01000092_01908289_01908682.mRNA mRNA downstream 134700 1907311 ~ 1908691 (-) True CI01000092_01908289_01908682
CI01000092_02055330_02056247.mRNA mRNA upstream 10345 2055017 ~ 2056286 (-) True CI01000092_02055330_02056247
CI01000092_02072036_02082309.mRNA mRNA upstream 27056 2071728 ~ 2083780 (-) True CI01000092_02072036_02082309
CI01000092_02134927_02166170.mRNA mRNA upstream 89146 2133818 ~ 2166547 (-) True CI01000092_02134927_02166170
CI01000092_02191463_02196322.mRNA mRNA upstream 146484 2191156 ~ 2196570 (-) True CI01000092_02191463_02196322
CI01000092_02408861_02410832.mRNA mRNA upstream 363909 2408581 ~ 2411486 (-) True CI01000092_02408861_02410832
TU345950 other downstream 811099 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 946473 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 984471 1058367 ~ 1058920 (-) False G304369
TU345843 other downstream 984527 1058325 ~ 1058864 (-) False G304369
TU347441 other upstream 679922 2724594 ~ 2724944 (-) True G305772
TU347691 other upstream 1633202 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 2451742 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 2759723 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 3108996 5153668 ~ 5154133 (-) True G306902

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017714 True 2325 mRNA 0.34 2 NC_007126.7 5155137 ~ 5157572 (-)