RNA id: CI01000092_03600064_03611514.mRNA


Basic Information

Item Value
RNA id CI01000092_03600064_03611514.mRNA
length 1984
RNA type mRNA
GC content 0.47
exon number 11
gene id CI01000092_03600064_03611514
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3599914 ~ 3612148 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAGGCCTCACTTTTATTAGTTAAAAAGTACTTTGCAGAGGTTATGGCTTACATTATATAATGTTATTAGTATCTGAAAAATAGTTGAGTTGAAATGGTTCAAATGAATTTTATAGATTTTTTTTCTGATTATTGATTATTCTGAAAGCTGTCTCATTGTGCAGTTCTTTATGTTGTTTTTCTGATCATATGTCTGACTACAGCATTAATAAGAAAGTTCACTTTAAAACCCACCTAATTAGTATTTAAAAATGAAGTCTGGATGAATTTATGTAATTGTATGTAAGACTGTTAATTATAAATCAGTTGGAAAGTTTTTTCTTTGGAGTTTATGTCCCTGGGTGAATGTTGCTTGGCACACTGAAAAATCGCACATCAAAGCCTCTCCGCAACCAGTGTTTATTAAGGAGGAGATACAATTAGCAGCGACTTCAAACAGCCTCCCGCTAGCTCACATACTCAGCTGTACTGTCAATGCTGTATATACTCATAAATCATAACAAATTCCCCCCACACAGCACAGATCATACTAATATAAGGCTGAATTAGGCAATGTCTTATCTTTTAATTTTTTCTTATCCTGTCTCTCCGTATCTAGTATGAGGAGTTGGTGCAGTACCCAGGCTCTGACGCCATGCCTGTGGGAGGCTACCGGGACGCCATGAGGTCACTTCCTCCGCCTCACTATGGCCACACTGTGCCTGACTCCCTGAAACACCACCGGGACCAGATCTACGGTCATCCGCTGTTTCCACTCCTGGCTCTGGTATTTGAAAAGTGTGAACTTGCCACTTGCTCACCACGAGACTCCATCTCTATGTCAAGCTCCGCCCACCTCCACGGCATGACCAACCACAGTGATGTCTGCTCCTCTGAATCGTTCAATGATGATATCACAGCCTTTGCCAAACAAATTCGATCAGAGAAACCCATCTTTTCATCAAATCCAGAACTGGATAATCTGATGATCCAGGCCATTCAAGTTCTACGGTTTCATCTATTAGAGCTAGAAAAGGTTCATGACCTCTGTGATAATTTCTGTCATCGCTACATCACCTGTCTCAAGGGCAAGATGCCCACTGATTTGGTGCTGGAGGACCGGGAGGGGGGATCCAAATCTGACGTGGAAGATTTCACTGGTTCTTGCACCAATCTGTCAGAACAAAATCAGTCTTGGTTGCGTGACCCAGATGACTGTGTGTCGACCCCCTCGGGCACCCCCAGCGCCTCCTGTGGCCTCACCTCACACAGCATGGAGAACTGCAGCGATGCGGGGGATGGGTTGGACGGAAGCGTGGCGTCGCCCAGCACAGGAGAAGAAGATGAAACGGACAGAGACAGACGAAACAACAAGAAAAGAGGAATCTTTCCCAAAGTTGCAACGAACATCATGAGAGCATGGCTCTTTCAGCACCTGTCGCATCCGTACCCATCTGAAGAACAGAAGAAACAGCTCTCCCAAGACACGGGTCTCACCATACTGCAGGTCAACAACTGGTTTATAAATGCCAGACGCAGAATAGTCCAGCCAATGATTGACCAATCAAATCGCTCAGGCCAGAGTGCTCCGTACAGTCCGGAGGGGGCAGCTCTAGGAGGATATGGGTTAGATGCTCAGTCTCATTTAGGTCTTAGGACAGCAGGACTTCAGGGAATGCCATCCCTGCCCACAGATTACCCTGGGGCCCTTCTGCCCCAGCCGGGATACTCCCACGCTGGCCCATCCTTGCACCCCTACCCCGGCCCCCACACTGCCATGCTGCTCCATCCACCGCCCCACAGCCACCCCGCCGAACCCCTCATAGGACAAGGCCTTGACATTCACGCCCACTAACCGAGAGCGGAGCAGAGGAGGGTGCGCTGAAAACAGGACGGAAGGGTACATTGACTTTGCAGTACCGCACCAAACCTTCAGGGCATCACCGCAGTCCACACATAGTGACTCTGAGAATGTCTTAAATGCACTGACCTGGCATCATATAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16671 MEIS3; homeobox protein Meis3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347485 lncRNA downstream 1185 3597328 ~ 3598729 (-) True G305810
TU347742 lncRNA downstream 8935 3590733 ~ 3590979 (-) True G306053
TU347737 lncRNA downstream 12805 3586867 ~ 3587109 (-) True G306051
TU347736 lncRNA downstream 22383 3577308 ~ 3577531 (-) True G306050
TU347726 lncRNA downstream 47335 3550840 ~ 3552579 (-) True G306041
TU347694 lncRNA upstream 59297 3671445 ~ 3674434 (-) True G306017
TU347687 lncRNA upstream 64619 3676767 ~ 3677768 (-) True G306010
TU347697 lncRNA upstream 70115 3682263 ~ 3682615 (-) True CI01000092_03682820_03688497
TU347777 lncRNA upstream 112879 3725027 ~ 3725677 (-) True G306083
TU347795 lncRNA upstream 130332 3742480 ~ 3743248 (-) True G306089
CI01000092_03418301_03428309.mRNA mRNA downstream 171605 3418301 ~ 3428309 (-) True CI01000092_03418301_03428309
CI01000092_03365550_03416277.mRNA mRNA downstream 183637 3365007 ~ 3416277 (-) True CI01000092_03365550_03416277
CI01000092_03307794_03308422.mRNA mRNA downstream 291400 3307202 ~ 3308514 (-) False CI01000092_03307794_03308422
CI01000092_03271224_03274775.mRNA mRNA downstream 324628 3271224 ~ 3275286 (-) True CI01000092_03271224_03274775
CI01000092_03224848_03225687.mRNA mRNA downstream 374119 3224461 ~ 3225795 (-) True CI01000092_03224848_03225687
CI01000092_03614992_03615400.mRNA mRNA upstream 2289 3614437 ~ 3616983 (-) True CI01000092_03614992_03615400
CI01000092_03630767_03645397.mRNA mRNA upstream 18478 3630626 ~ 3646156 (-) True CI01000092_03630767_03645397
CI01000092_03652598_03660979.mRNA mRNA upstream 40450 3652598 ~ 3661104 (-) True CI01000092_03652598_03660979
CI01000092_03682820_03688497.mRNA mRNA upstream 70266 3682414 ~ 3688531 (-) False CI01000092_03682820_03688497
CI01000092_03702024_03712418.mRNA mRNA upstream 88798 3700946 ~ 3712418 (-) True CI01000092_03702024_03712418
TU347441 other downstream 874970 2724594 ~ 2724944 (-) True G305772
TU345950 other downstream 2367622 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 2502996 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 2540994 1058367 ~ 1058920 (-) False G304369
TU347691 other upstream 65726 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 884266 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 1192247 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 1541520 5153668 ~ 5154133 (-) True G306902

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017765 False 2373 mRNA 0.47 13 NC_007126.7 6838039 ~ 6863317 (-)