RNA id: TU345427


Basic Information

Item Value
RNA id TU345427
length 227
lncRNA type intronic
GC content 0.38
exon number 1
gene id G304019
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 16666 ~ 16892 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTCTTGGTCCGTTCTTCTGTCAGGGAACATTTGTGTTGAATGAAGCGCACAACAGGAATAGTCCAAGTTGTAAGTATTTATTTAACAAATCCAAAGACAGGAGATCACAACCACATAAAACAAAGATGAGAACGGACAAGGAACTGAAAGACACAAGGAGTATATATACTAGAACAAATGAGGGATCTAAATGAGATAAGTGATAAACAGGGCATAGGTGAATGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345428 lncRNA upstream 32 16924 ~ 17138 (-) True G304020
TU345429 lncRNA upstream 296 17188 ~ 17416 (-) True G304021
TU345430 lncRNA upstream 1530 18422 ~ 18624 (-) True G304022
TU345433 lncRNA upstream 5267 22159 ~ 22448 (-) True G304025
TU345409 lncRNA upstream 62621 79513 ~ 86265 (-) False G304004
CI01000092_00103480_00114306.mRNA mRNA upstream 85276 102168 ~ 114742 (-) True CI01000092_00103480_00114306
CI01000092_00116452_00128007.mRNA mRNA upstream 98443 115335 ~ 128007 (-) True CI01000092_00116452_00128007
CI01000092_00156990_00162891.mRNA mRNA upstream 140098 156990 ~ 162891 (-) True CI01000092_00156990_00162891
CI01000092_00174874_00180333.mRNA mRNA upstream 157982 174874 ~ 180333 (-) True CI01000092_00174874_00180333
CI01000092_00237358_00269420.mRNA mRNA upstream 219420 236312 ~ 271283 (-) True CI01000092_00237358_00269420
TU345836 other upstream 1038412 1055304 ~ 1055722 (-) True G304368
TU345843 other upstream 1041433 1058325 ~ 1058864 (-) False G304369
TU345840 other upstream 1041475 1058367 ~ 1058920 (-) False G304369
TU345842 other upstream 1041475 1058367 ~ 1058864 (-) True G304369
TU345834 other upstream 1069770 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333

Expression Profile