RNA id: TU345433


Basic Information

Item Value
RNA id TU345433
length 290
lncRNA type intronic
GC content 0.32
exon number 1
gene id G304025
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 22159 ~ 22448 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAACAAGCTAAAACAGATGTGAAATGCAGAAAGAAAGAAGAGGAATTTGTCTATAATTCCTCTATAACCAGTGTTGTGGAAAGTTACTTTTAAAAGTAGTGCATTACAATATTGCGTTACTCCATAAAAAGTAACTAATTGTGTTACTTTTTATAGAAAGCTATGCATTACATACTTTTGCGTTACTTTTCTCACCTGGGCTGGGCTTGGTTGTTTGTTTTTTAATAATAAAAAAAATAAAGGCCTATTCACACCAAATGTAACTCATGTTACTTGTAAAGCGTTACCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345430 lncRNA downstream 3535 18422 ~ 18624 (-) True G304022
TU345429 lncRNA downstream 4743 17188 ~ 17416 (-) True G304021
TU345428 lncRNA downstream 5021 16924 ~ 17138 (-) True G304020
TU345427 lncRNA downstream 5267 16666 ~ 16892 (-) True G304019
TU345409 lncRNA upstream 57065 79513 ~ 86265 (-) False G304004
TU345410 lncRNA upstream 57077 79525 ~ 86265 (-) True G304004
TU345420 lncRNA upstream 69187 91635 ~ 93404 (-) True G304012
TU345466 lncRNA upstream 244216 266664 ~ 266947 (-) True G304050
TU345468 lncRNA upstream 258787 281235 ~ 281438 (-) True G304052
CI01000092_00103480_00114306.mRNA mRNA upstream 79720 102168 ~ 114742 (-) True CI01000092_00103480_00114306
CI01000092_00116452_00128007.mRNA mRNA upstream 92887 115335 ~ 128007 (-) True CI01000092_00116452_00128007
CI01000092_00156990_00162891.mRNA mRNA upstream 134542 156990 ~ 162891 (-) True CI01000092_00156990_00162891
CI01000092_00174874_00180333.mRNA mRNA upstream 152426 174874 ~ 180333 (-) True CI01000092_00174874_00180333
CI01000092_00237358_00269420.mRNA mRNA upstream 213864 236312 ~ 271283 (-) True CI01000092_00237358_00269420
TU345836 other upstream 1032856 1055304 ~ 1055722 (-) True G304368
TU345843 other upstream 1035877 1058325 ~ 1058864 (-) False G304369
TU345840 other upstream 1035919 1058367 ~ 1058920 (-) False G304369
TU345842 other upstream 1035919 1058367 ~ 1058864 (-) True G304369
TU345834 other upstream 1064214 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333

Expression Profile