RNA id: TU345409


Basic Information

Item Value
RNA id TU345409
length 1895
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id G304004
representative False

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 79513 ~ 86265 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAATTTGCAACGTATTCGGAGGGGAGAAGCACATGGAACAATCAATGCAGAGTTCAATCACATCACAATCAGAAGCCTCAATCAAGAATTCTTCTCAGTGCTTTATTAACTTGCAGCTTGATTTCTGGAAATTTGTGCAACAAAGAAAGTGGCAGTTGAAAAGAGTTTATTGCGCAAATTAAATCTATGCACTGTCATCACTGCTAAGTGCACAGTTCTTCATGGCCTTCCTCTCATTCTTGGAGAAGAAACCTCTGATTTTTTTAAACATTGCTGACAGGACTGTGATTGTGACACACCCTTCTTCAGGATTCTGACTGCGATAACAGAAGACAGCCAGGATTCTTCCTCCACAAGAAATACATTTGGAGTCTTCATGCACTGCATTATTCTAGACTGAGCCATTGTCATGCATGAACTAGAAAACCTTCCAGGTGCCATGTGACTAATTTCTGGACTGATTTGTGCCAAATTTGGAGTTTTTCTTTCCCTTGGACACAATTCTCTGAAACCAAAACTACATTTACTTAAAACCCTTCTGTTGATGTAAGCAAAGGCTATTTGAGATCGTTAAAGGCTTAGTTCACCCAAAAATGTAAATTCTGTCATCAGTTTTTCACTCTCATGTTGTTTGACTTTGGTTAGTCTTTCAAACACAAACTTAGATATTTTTAAAGAAAACAGGCTGGAAAACTTTTTGGATCTTTTAAGTTTTGTTTACCTGGACTTTCAGTTGGAGGTACAGAAACCTCTCAGATTTCATTAAAATAATTTCATTTATGTTTTAAAGTCTAACCAAAGTCTTCTGAGTTTGTGACATCATGAGGGTGAGTAAATGATGAGAGAATTTAATTTTTTTTGCGAACTATTGCTTAGGGCTGGGCGATATGGCTGAAAACTGTATCACGATATCAGTGTCTCATATTGGACGATATCGATAATTATTTATTTTTTTATGACCCATTTAAAATAAGGACCAGGAGAAAAATATATTACATTTAAATATTTTTATTTTAAACTTAACCTTCCTCTGATCATAATCCCCTCAGTTATTAAGACAGAAATGTCAACAACCATGGAAAACTACAGCTACAGATGTTGTTGGTTGAATACAGCTGTGCTCCAAAGGGTGAGCGCGGCTAAGGTGGTACATCAAGTTCGTGGTATTACCAGTCTTGGCGGGGACGACAGTCTTGCATAATTTGCAGACGACATTGGTCTGACTACGGTCAGACTTATAATATCCAAAAAAACTGCCATACTGGCGAGCTGACTTTTCCTCTTTTATTTACAATTTCCTCGCTCGCTGCGGCACTCATTTTCTGCTTATCAGTCGCCGGTTACTGAAGAGGAATCCAGCAGACCAGCACGAGACAACGATATGGCGCAACCAAACTTGATACTGTTACATGATTGGCTGTTATTGGCTGTTGCTAGGTTACCAGAGAGCGAGTGCCTTTGTTAATGCAACCAAACTTGCTTCGCAGCCTCTGTTTTCTTCCGATGAAGAATAAAAAATATCGAACGTTTTATCGAACACATTTTTTATTGATATCGATCACGTGTCTATCGCGATACATATCGTTATCGTTTTATCGCCCAGCCCTACTATTGCTTTAATCTTGCTGTTGCACTAAAGTCAACATTCTTTTTAATTAAAGTGTTAAACTGTCAAAATTAACATTGATTTTTGTTTCATGGTCAGCTATTCAGTTTCTTGTCAAAAGACTGTTAGTATTATTGGTTTATTCATCAGTCATGATTTGTAATGCATATTGTTACATTAATGAAAAATGTTTAGAATTTAGGGGTGCCAGAATGGCATTGTTTGGTACATTGTAGTGTCTGAAGAAAATTGATGAGCAATAAATAATGTTTTGCCTGAGATCTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345433 lncRNA downstream 57065 22159 ~ 22448 (-) True G304025
TU345430 lncRNA downstream 60889 18422 ~ 18624 (-) True G304022
TU345429 lncRNA downstream 62097 17188 ~ 17416 (-) True G304021
TU345428 lncRNA downstream 62375 16924 ~ 17138 (-) True G304020
TU345427 lncRNA downstream 62621 16666 ~ 16892 (-) True G304019
TU345420 lncRNA upstream 5370 91635 ~ 93404 (-) True G304012
TU345466 lncRNA upstream 180399 266664 ~ 266947 (-) True G304050
TU345468 lncRNA upstream 194970 281235 ~ 281438 (-) True G304052
TU345469 lncRNA upstream 195254 281519 ~ 282033 (-) False G304053
TU345470 lncRNA upstream 195916 282181 ~ 282453 (-) False G304053
CI01000092_00015546_00042149.mRNA mRNA downstream 37364 15401 ~ 42149 (-) True CI01000092_00015546_00042149
CI01000092_00103480_00114306.mRNA mRNA upstream 15903 102168 ~ 114742 (-) True CI01000092_00103480_00114306
CI01000092_00116452_00128007.mRNA mRNA upstream 29070 115335 ~ 128007 (-) True CI01000092_00116452_00128007
CI01000092_00156990_00162891.mRNA mRNA upstream 70725 156990 ~ 162891 (-) True CI01000092_00156990_00162891
CI01000092_00174874_00180333.mRNA mRNA upstream 88609 174874 ~ 180333 (-) True CI01000092_00174874_00180333
CI01000092_00237358_00269420.mRNA mRNA upstream 150047 236312 ~ 271283 (-) True CI01000092_00237358_00269420
TU345836 other upstream 969039 1055304 ~ 1055722 (-) True G304368
TU345843 other upstream 972060 1058325 ~ 1058864 (-) False G304369
TU345840 other upstream 972102 1058367 ~ 1058920 (-) False G304369
TU345842 other upstream 972102 1058367 ~ 1058864 (-) True G304369
TU345834 other upstream 1000397 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333

Expression Profile