RNA id: TU345420


Basic Information

Item Value
RNA id TU345420
length 911
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G304012
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 91635 ~ 93404 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCCCTTAATTATGCAGAACTTTAAGGCTTAATATAATTTAAACGGATGAGTTATAAAAAAATTCACCTCAGAGTTGTCTTGAAGGGCAAAATTAGCAGTATAGACCAAAACCACAATTTGTACCAACCTGTAAACGTTTTTTTCTGCTGTAAGTTTTTCTGCTGTAGCCATTTTAACATCGGACTCAATGAGATTGACTCTCTTTTGGAGCCTGTCCCTAGCGGCCAGTCGATTAATTGCAGTTTAAGTCACTTCCGTATTGGCTTCACAAGAAACTGGGGGAGGTTGCCGCTTGGTTCTCCCTTAGTCTATGTGTCATGTTCTGATTGGTTGTTTATGGTCATGTGGTTTTCAGTTCTGTTCTGTCCCTTGTTCCTTGTGTCACTTCCCCATTGGTTGCCATAGTCATGTGGTCACTAAGTTCATGTATTTAAGCCATTGTCTTCCCCATGTTACTTGGTTGTGTATTGTTAATGTAATCCTGCTGTCGGTGAGTGTTCATGGTCTGGTCTGGTCTGTTCATGGTCTGTTCATGGTCTGTTCATGGTCATGGTCAGGTCAGGTCAGGTCTGTTCATGGTCAGGTCAGGTCAGGTCTGTTCATCAAAAAAAGAAGGCAAATTTAGCAAGTCCTCCCAGATAGCACACATACATGTGGCCGATGTCGGCCCCAGAGCGGAACGTCGGGCTCATATCTATAACATCTAATAAGGATCGGCCAGGCATAGGCGCGTGTCTTCAGTCAGTGCTCTATTTCCAGCTTGTCGGCTTTGGGTCGGATCACGACTGCAGGCCGATGCCGCGCTTATCTGTTTGCGCGTGACCATTCATCTCTGCAACCGACGAGAGAAATGGCGACTCCGGCGACATCTGTGGTTTTCAGGAGTGAACAAATCTACAACACTGGAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345409 lncRNA downstream 5370 79513 ~ 86265 (-) False G304004
TU345410 lncRNA downstream 5370 79525 ~ 86265 (-) True G304004
TU345433 lncRNA downstream 69187 22159 ~ 22448 (-) True G304025
TU345430 lncRNA downstream 73011 18422 ~ 18624 (-) True G304022
TU345429 lncRNA downstream 74219 17188 ~ 17416 (-) True G304021
TU345466 lncRNA upstream 173260 266664 ~ 266947 (-) True G304050
TU345468 lncRNA upstream 187831 281235 ~ 281438 (-) True G304052
TU345469 lncRNA upstream 188115 281519 ~ 282033 (-) False G304053
TU345470 lncRNA upstream 188777 282181 ~ 282453 (-) False G304053
TU345471 lncRNA upstream 188777 282181 ~ 282555 (-) True G304053
CI01000092_00015546_00042149.mRNA mRNA downstream 49486 15401 ~ 42149 (-) True CI01000092_00015546_00042149
CI01000092_00103480_00114306.mRNA mRNA upstream 8764 102168 ~ 114742 (-) True CI01000092_00103480_00114306
CI01000092_00116452_00128007.mRNA mRNA upstream 21931 115335 ~ 128007 (-) True CI01000092_00116452_00128007
CI01000092_00156990_00162891.mRNA mRNA upstream 63586 156990 ~ 162891 (-) True CI01000092_00156990_00162891
CI01000092_00174874_00180333.mRNA mRNA upstream 81470 174874 ~ 180333 (-) True CI01000092_00174874_00180333
CI01000092_00237358_00269420.mRNA mRNA upstream 142908 236312 ~ 271283 (-) True CI01000092_00237358_00269420
TU345836 other upstream 961900 1055304 ~ 1055722 (-) True G304368
TU345843 other upstream 964921 1058325 ~ 1058864 (-) False G304369
TU345840 other upstream 964963 1058367 ~ 1058920 (-) False G304369
TU345842 other upstream 964963 1058367 ~ 1058864 (-) True G304369
TU345834 other upstream 993258 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333

Expression Profile