RNA id: TU345471


Basic Information

Item Value
RNA id TU345471
length 375
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G304053
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 281519 ~ 282555 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGGGGACCAATGGCAGAGGGTAACGAAACTTAACTGTGATATCGTTCAGTCCACGGTAGTCTATGCAGGGTCGAAGACTGCCGTCCTTCTTTTTAACGAAGAAGAAGCCAGACGCTGCCGGAGATGTCGAGGGTCGGATGAACCCCTTGGCCAGTTCTTCCTCAATGTATGCTTTCATAGCTGCCGATTCTGGTTGAGACAGGGGAAATATTCTGCCCTTGGGGGGCGTGGTACCTGGAAGCAGATCGATGGCGCAGTCACTGGAACGGTGAGGAGGTAACTCGGTCGACTTGCTTTTGCTGAAAGCAACCGCCAGATCGGCATACTCAGCGGGAATGTCGGGCTCGTCATGGTTGGGCTCGTGAATTGAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345469 lncRNA downstream 148 281519 ~ 282033 (-) False G304053
TU345468 lncRNA downstream 743 281235 ~ 281438 (-) True G304052
TU345466 lncRNA downstream 15234 266664 ~ 266947 (-) True G304050
TU345420 lncRNA downstream 188777 91635 ~ 93404 (-) True G304012
TU345410 lncRNA downstream 195916 79525 ~ 86265 (-) True G304004
TU345477 lncRNA upstream 54460 337015 ~ 337687 (-) False G304057
TU345480 lncRNA upstream 54460 337015 ~ 337630 (-) True G304057
TU345516 lncRNA upstream 123709 406264 ~ 408867 (-) True CI01000092_00409098_00411916
TU345570 lncRNA upstream 209624 492179 ~ 492631 (-) False G304126
TU345568 lncRNA upstream 209745 492300 ~ 492631 (-) True G304126
CI01000092_00271933_00272986.mRNA mRNA downstream 9195 271388 ~ 272986 (-) True CI01000092_00271933_00272986
CI01000092_00237358_00269420.mRNA mRNA downstream 10898 236312 ~ 271283 (-) True CI01000092_00237358_00269420
CI01000092_00174874_00180333.mRNA mRNA downstream 101848 174874 ~ 180333 (-) True CI01000092_00174874_00180333
CI01000092_00156990_00162891.mRNA mRNA downstream 119290 156990 ~ 162891 (-) True CI01000092_00156990_00162891
CI01000092_00116452_00128007.mRNA mRNA downstream 154174 115335 ~ 128007 (-) True CI01000092_00116452_00128007
CI01000092_00335844_00338581.mRNA mRNA upstream 52771 335326 ~ 338581 (-) True CI01000092_00335844_00338581
CI01000092_00409098_00411916.mRNA mRNA upstream 126298 408853 ~ 411916 (-) False CI01000092_00409098_00411916
CI01000092_00418628_00428488.mRNA mRNA upstream 135267 417822 ~ 428620 (-) True CI01000092_00418628_00428488
CI01000092_00506401_00508318.mRNA mRNA upstream 223184 505739 ~ 508524 (-) True CI01000092_00506401_00508318
CI01000092_00508717_00509840.mRNA mRNA upstream 226039 508594 ~ 510328 (-) True CI01000092_00508717_00509840
TU345836 other upstream 772749 1055304 ~ 1055722 (-) True G304368
TU345843 other upstream 775770 1058325 ~ 1058864 (-) False G304369
TU345840 other upstream 775812 1058367 ~ 1058920 (-) False G304369
TU345842 other upstream 775812 1058367 ~ 1058864 (-) True G304369
TU345834 other upstream 804107 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333

Expression Profile