RNA id: TU345568


Basic Information

Item Value
RNA id TU345568
length 332
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G304126
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 492179 ~ 492631 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGGACACAGAGCTCTGTGAACAGCCAGCCTCTTTTGCAATGACCTTTTGTGTCTTGCCCTCCTTGTGCAAGGTGTCAATGGTCGTCTTTTGGACAACTGTCAAGTCAGCAGTCTTCCCCATGATTGTGTAGCCTACAGAACTAGACTGAGAGACCATTTAAAGGCCTTTGCAGGTGTTTTGAGTTAATTAGCTGATTGGAGTGTGGCACCAGGTGTCTTCAATATTGAACCTTTTCACAATATTCTAATTTTCTGAGATACTGAATTTGGGATTTTCCTTAGTTGTCAGTTATAATCATCAAAATTAAAAGAAATAAACATTTGAAATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345516 lncRNA downstream 83433 406264 ~ 408867 (-) True CI01000092_00409098_00411916
TU345477 lncRNA downstream 154613 337015 ~ 337687 (-) False G304057
TU345480 lncRNA downstream 154670 337015 ~ 337630 (-) True G304057
TU345471 lncRNA downstream 209745 282181 ~ 282555 (-) True G304053
TU345470 lncRNA downstream 209847 282181 ~ 282453 (-) False G304053
TU345590 lncRNA upstream 20472 513103 ~ 513417 (-) True G304146
TU345591 lncRNA upstream 21259 513890 ~ 514356 (-) True G304147
TU345596 lncRNA upstream 27205 519836 ~ 520585 (-) True G304152
TU345598 lncRNA upstream 29434 522065 ~ 522372 (-) True G304154
TU345511 lncRNA upstream 36722 529353 ~ 533252 (-) True G304085
CI01000092_00418628_00428488.mRNA mRNA downstream 63680 417822 ~ 428620 (-) True CI01000092_00418628_00428488
CI01000092_00409098_00411916.mRNA mRNA downstream 80384 408853 ~ 411916 (-) False CI01000092_00409098_00411916
CI01000092_00335844_00338581.mRNA mRNA downstream 153719 335326 ~ 338581 (-) True CI01000092_00335844_00338581
CI01000092_00271933_00272986.mRNA mRNA downstream 219314 271388 ~ 272986 (-) True CI01000092_00271933_00272986
CI01000092_00237358_00269420.mRNA mRNA downstream 221017 236312 ~ 271283 (-) True CI01000092_00237358_00269420
CI01000092_00506401_00508318.mRNA mRNA upstream 13108 505739 ~ 508524 (-) True CI01000092_00506401_00508318
CI01000092_00508717_00509840.mRNA mRNA upstream 15963 508594 ~ 510328 (-) True CI01000092_00508717_00509840
CI01000092_00579690_00648591.mRNA mRNA upstream 86559 579190 ~ 648591 (-) True CI01000092_00579690_00648591
CI01000092_00847979_00851661.mRNA mRNA upstream 354667 847298 ~ 851661 (-) True CI01000092_00847979_00851661
CI01000092_01054403_01069241.mRNA mRNA upstream 561715 1054346 ~ 1069241 (-) True CI01000092_01054403_01069241
TU345836 other upstream 562673 1055304 ~ 1055722 (-) True G304368
TU345843 other upstream 565694 1058325 ~ 1058864 (-) False G304369
TU345840 other upstream 565736 1058367 ~ 1058920 (-) False G304369
TU345842 other upstream 565736 1058367 ~ 1058864 (-) True G304369
TU345834 other upstream 594031 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333

Expression Profile