RNA id: TU345590


Basic Information

Item Value
RNA id TU345590
length 315
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G304146
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 513103 ~ 513417 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATTATGTAAATGTTTTTGTTATGTTAATGTTTTTGGAGATTACCCTAGTGGTGAAGTGTTGAGCTTGTGCTTGGGTTGAGGACCTGCTAACAAGAATTGCCTTTTTTATATAATGAAGCAACCACTCTGATAGTGCTTTGGATCAAACCAGTATCATTTCTAGATGGCCAACATTGATTATCACATGTGTAAATAGTTAAGTTTAGTTTGTTGCTATGTAAAGGACAAAACAAAAGCATTAATAATCATATGATTATTATATATATATAGAATTCATCTATTTAAAAATAATTCATTACAAACAGATTTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345570 lncRNA downstream 20472 492179 ~ 492631 (-) False G304126
TU345568 lncRNA downstream 20472 492300 ~ 492631 (-) True G304126
TU345516 lncRNA downstream 104236 406264 ~ 408867 (-) True CI01000092_00409098_00411916
TU345477 lncRNA downstream 175416 337015 ~ 337687 (-) False G304057
TU345480 lncRNA downstream 175473 337015 ~ 337630 (-) True G304057
TU345591 lncRNA upstream 473 513890 ~ 514356 (-) True G304147
TU345596 lncRNA upstream 6419 519836 ~ 520585 (-) True G304152
TU345598 lncRNA upstream 8648 522065 ~ 522372 (-) True G304154
TU345511 lncRNA upstream 15936 529353 ~ 533252 (-) True G304085
TU345512 lncRNA upstream 44291 557708 ~ 563397 (-) True G304086
CI01000092_00508717_00509840.mRNA mRNA downstream 2775 508594 ~ 510328 (-) True CI01000092_00508717_00509840
CI01000092_00506401_00508318.mRNA mRNA downstream 4579 505739 ~ 508524 (-) True CI01000092_00506401_00508318
CI01000092_00418628_00428488.mRNA mRNA downstream 84483 417822 ~ 428620 (-) True CI01000092_00418628_00428488
CI01000092_00409098_00411916.mRNA mRNA downstream 101187 408853 ~ 411916 (-) False CI01000092_00409098_00411916
CI01000092_00335844_00338581.mRNA mRNA downstream 174522 335326 ~ 338581 (-) True CI01000092_00335844_00338581
CI01000092_00579690_00648591.mRNA mRNA upstream 65773 579190 ~ 648591 (-) True CI01000092_00579690_00648591
CI01000092_00847979_00851661.mRNA mRNA upstream 333881 847298 ~ 851661 (-) True CI01000092_00847979_00851661
CI01000092_01054403_01069241.mRNA mRNA upstream 540929 1054346 ~ 1069241 (-) True CI01000092_01054403_01069241
CI01000092_01086701_01097333.mRNA mRNA upstream 572987 1086404 ~ 1097333 (-) False CI01000092_01086701_01097333
CI01000092_01099061_01100011.mRNA mRNA upstream 584767 1098184 ~ 1100021 (-) True CI01000092_01099061_01100011
TU345836 other upstream 541887 1055304 ~ 1055722 (-) True G304368
TU345843 other upstream 544908 1058325 ~ 1058864 (-) False G304369
TU345840 other upstream 544950 1058367 ~ 1058920 (-) False G304369
TU345842 other upstream 544950 1058367 ~ 1058864 (-) True G304369
TU345834 other upstream 573245 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333

Expression Profile