RNA id: TU345511


Basic Information

Item Value
RNA id TU345511
length 1079
lncRNA type inter_gene
GC content 0.37
exon number 6
gene id G304085
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 529353 ~ 533252 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCAACGTACTCTGAGGGGAGAAGCACATGGAACGATTTCTTAAGATTAAAATGTTTGAAGACTACACAATGGATCTGTTTTGTGGAATGAGATATGCATTAGAAATATCAATGCAGAGTTCAATCACATCACAATCAGAAGCCTCAATCAAGAATTCTTCTCAGCGCTTTATCAACCTGCAGCTTGAATTCTGGAAATTTGTGCAACAAAGAAAGTGGCAGTTGAAAAGAGAGTTTCTTGCGCAAATTAAATCTATGCACTGTCATCACTGCTAAGTGCACAGTTCTTCTTGGCCTTCCTCTTATTCTTGGAGAAGAAACCTCTGATTTTTTTAAACAGTGCTGACAGGACTGTGAATGTGACACACCCTTCTTGGGGATTCTGACCGTGATAACAGAAGACAGCCAGGATTCTTCCTCCACAAGAACTACATTTGGAGTCTTCATGCACAGCATTATTCTAGACTGAGCCATTGTCATGGATGAACTTAAAACCTTCCAGGTGCCATGTGACTAATTTTTGGGCTGATATGTGCCAAATTTGGAGTTTTTCTTTCCCTTGGACCCAATTCTCTGAAATCAAAACTACATTCACTTAAAACCCTTCTGTTGATGTAAGCAAAGGCTGTTTGAGATCGTTAAAGGCTTAGTTCACCAAAAAATGTAAATTCTGTCATCAGTTTTTCACTCTCATGTTGTTTGACTTTGGTTAGTCTTTCAAACACAAATTTAGATATTTTTAAAGAAAACAGGCTGGAAAACTTTTTGGATCTTTTAAGTTTTGGTTACCTGGACTTTCAGTTGGAGGGACAGAAACCTCTCAGATTTCATTAAAAATATCTTCATTTATGTTTCAAAGTCTAACCAAAGTCTTATGGGTTTGTGACGTCATGAGGGTGAGTAAATGAGAGAATTTCATTTTTTTCTCTTTAATCTTGTGGTTGCACTAAAGTCAACATTCTTTTTCAGTCATGATTTGTAATCCATATTGTTATATTAATGAAAAATGTTTAGAATTTAGGGGTGCCAGAATGGCATTGTTTGGTACATTGTAGTGTCTGAAGAAAATTGATGAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345598 lncRNA downstream 6981 522065 ~ 522372 (-) True G304154
TU345596 lncRNA downstream 8768 519836 ~ 520585 (-) True G304152
TU345591 lncRNA downstream 14997 513890 ~ 514356 (-) True G304147
TU345590 lncRNA downstream 15936 513103 ~ 513417 (-) True G304146
TU345570 lncRNA downstream 36722 492179 ~ 492631 (-) False G304126
TU345512 lncRNA upstream 24456 557708 ~ 563397 (-) True G304086
TU345517 lncRNA upstream 30303 563555 ~ 563891 (-) True G304091
TU345664 lncRNA upstream 244460 777712 ~ 777947 (-) True G304218
TU345672 lncRNA upstream 256554 789806 ~ 790021 (-) True G304226
TU345717 lncRNA upstream 352946 886198 ~ 886555 (-) True G304260
CI01000092_00508717_00509840.mRNA mRNA downstream 19025 508594 ~ 510328 (-) True CI01000092_00508717_00509840
CI01000092_00506401_00508318.mRNA mRNA downstream 20829 505739 ~ 508524 (-) True CI01000092_00506401_00508318
CI01000092_00418628_00428488.mRNA mRNA downstream 100733 417822 ~ 428620 (-) True CI01000092_00418628_00428488
CI01000092_00409098_00411916.mRNA mRNA downstream 117437 408853 ~ 411916 (-) False CI01000092_00409098_00411916
CI01000092_00335844_00338581.mRNA mRNA downstream 190772 335326 ~ 338581 (-) True CI01000092_00335844_00338581
CI01000092_00579690_00648591.mRNA mRNA upstream 45938 579190 ~ 648591 (-) True CI01000092_00579690_00648591
CI01000092_00847979_00851661.mRNA mRNA upstream 314046 847298 ~ 851661 (-) True CI01000092_00847979_00851661
CI01000092_01054403_01069241.mRNA mRNA upstream 521094 1054346 ~ 1069241 (-) True CI01000092_01054403_01069241
CI01000092_01086701_01097333.mRNA mRNA upstream 553152 1086404 ~ 1097333 (-) False CI01000092_01086701_01097333
CI01000092_01099061_01100011.mRNA mRNA upstream 564932 1098184 ~ 1100021 (-) True CI01000092_01099061_01100011
TU345836 other upstream 522052 1055304 ~ 1055722 (-) True G304368
TU345843 other upstream 525073 1058325 ~ 1058864 (-) False G304369
TU345840 other upstream 525115 1058367 ~ 1058920 (-) False G304369
TU345842 other upstream 525115 1058367 ~ 1058864 (-) True G304369
TU345834 other upstream 553410 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333

Expression Profile