RNA id: TU345718


Basic Information

Item Value
RNA id TU345718
length 245
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G304261
representative False

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 889704 ~ 890059 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTGATTAGACTTCACTGACAGACCCAGAAGGAAACGAAGGAAAAGGTCCAGATGCCCATTTTTACTGTCTAAAGCCTCATCCACAGCTCTCTGATGGAGATCAGATAGTGAAACTTTGTCTCCATTAGTTGGTGTGGTAATCTGGTCAAACACATTGATGCTGTTGTTTATAAAGGAGAGATGCACATATAGAGCTGCTAGATGTTCCTGAATGCTCAGATGAACAAAGCAGAAGACTTTCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345717 lncRNA downstream 3230 886198 ~ 886555 (-) True G304260
TU345672 lncRNA downstream 99764 789806 ~ 790021 (-) True G304226
TU345664 lncRNA downstream 111838 777712 ~ 777947 (-) True G304218
TU345517 lncRNA downstream 325894 563555 ~ 563891 (-) True G304091
TU345512 lncRNA downstream 326388 557708 ~ 563397 (-) True G304086
TU345728 lncRNA upstream 3713 893742 ~ 894424 (-) True G304264
TU345729 lncRNA upstream 11171 901200 ~ 901632 (-) True G304265
TU345732 lncRNA upstream 14357 904386 ~ 904688 (-) True G304268
TU345733 lncRNA upstream 19896 909925 ~ 910313 (-) True G304269
TU345738 lncRNA upstream 25262 915291 ~ 915491 (-) True G304274
CI01000092_00847979_00851661.mRNA mRNA downstream 38124 847298 ~ 851661 (-) True CI01000092_00847979_00851661
CI01000092_00579690_00648591.mRNA mRNA downstream 241194 579190 ~ 648591 (-) True CI01000092_00579690_00648591
CI01000092_00508717_00509840.mRNA mRNA downstream 379457 508594 ~ 510328 (-) True CI01000092_00508717_00509840
CI01000092_00506401_00508318.mRNA mRNA downstream 381261 505739 ~ 508524 (-) True CI01000092_00506401_00508318
CI01000092_00418628_00428488.mRNA mRNA downstream 461165 417822 ~ 428620 (-) True CI01000092_00418628_00428488
CI01000092_01054403_01069241.mRNA mRNA upstream 164317 1054346 ~ 1069241 (-) True CI01000092_01054403_01069241
CI01000092_01086701_01097333.mRNA mRNA upstream 196375 1086404 ~ 1097333 (-) False CI01000092_01086701_01097333
CI01000092_01099061_01100011.mRNA mRNA upstream 208155 1098184 ~ 1100021 (-) True CI01000092_01099061_01100011
CI01000092_01110360_01113717.mRNA mRNA upstream 220250 1110279 ~ 1115228 (-) True CI01000092_01110360_01113717
CI01000092_01122961_01135673.mRNA mRNA upstream 232793 1122822 ~ 1136003 (-) True CI01000092_01122961_01135673
TU345836 other upstream 165275 1055304 ~ 1055722 (-) True G304368
TU345843 other upstream 168296 1058325 ~ 1058864 (-) False G304369
TU345840 other upstream 168338 1058367 ~ 1058920 (-) False G304369
TU345842 other upstream 168338 1058367 ~ 1058864 (-) True G304369
TU345834 other upstream 196633 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333

Expression Profile