RNA id: TU345836


Basic Information

Item Value
RNA id TU345836
length 393
RNA type TUCP
GC content 0.50
exon number 2
gene id G304368
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 1055304 ~ 1055722 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTCATCTGCTGGTGTTGGTCCACTGTGTTTTCTGAGGTCCAAGGTCAACGCAGCCGTATACCAGGAAGTTTTAGAGCACTTCATGCTTCCTGCTGCTGACCAACTTTATGGAGATGCAGATTTCATTTTCCAACAGGACTTGGCACCTGCACACAGTGCCAAAGCTACCAGTACCTGGTTTAAGGACCATGGTATCCCTGTTCTTAATTGGCCAGCAAACTCACCTGACTATTGTGAAGAGGAAGATGCGATATGCCAGACCCAACAATGCAGAAGAGCTGAAGGCCACTATCAGAGCAACCTGGGCTCTTATAACACCTGAGCAGTGCCACAGACTGATCGACTCCATGCCACGCCACATTGCTGCAGTAATTCAGGCAAAAGGAGCCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345738 lncRNA downstream 139813 915291 ~ 915491 (-) True G304274
TU345733 lncRNA downstream 144991 909925 ~ 910313 (-) True G304269
TU345732 lncRNA downstream 150616 904386 ~ 904688 (-) True G304268
TU345729 lncRNA downstream 153672 901200 ~ 901632 (-) True G304265
TU345728 lncRNA downstream 160880 893742 ~ 894424 (-) True G304264
TU345838 lncRNA upstream 2603 1058325 ~ 1058606 (-) False G304369
TU345845 lncRNA upstream 4137 1059859 ~ 1060609 (-) True G304371
TU345846 lncRNA upstream 4919 1060641 ~ 1061328 (-) True G304372
TU345853 lncRNA upstream 15688 1071410 ~ 1071997 (-) True G304378
TU345856 lncRNA upstream 20576 1076298 ~ 1076529 (-) True G304380
CI01000092_00847979_00851661.mRNA mRNA downstream 203643 847298 ~ 851661 (-) True CI01000092_00847979_00851661
CI01000092_00579690_00648591.mRNA mRNA downstream 406713 579190 ~ 648591 (-) True CI01000092_00579690_00648591
CI01000092_00508717_00509840.mRNA mRNA downstream 544976 508594 ~ 510328 (-) True CI01000092_00508717_00509840
CI01000092_00506401_00508318.mRNA mRNA downstream 546780 505739 ~ 508524 (-) True CI01000092_00506401_00508318
CI01000092_00418628_00428488.mRNA mRNA downstream 626684 417822 ~ 428620 (-) True CI01000092_00418628_00428488
CI01000092_01086701_01097333.mRNA mRNA upstream 30682 1086404 ~ 1097333 (-) False CI01000092_01086701_01097333
CI01000092_01099061_01100011.mRNA mRNA upstream 42462 1098184 ~ 1100021 (-) True CI01000092_01099061_01100011
CI01000092_01110360_01113717.mRNA mRNA upstream 54557 1110279 ~ 1115228 (-) True CI01000092_01110360_01113717
CI01000092_01122961_01135673.mRNA mRNA upstream 67100 1122822 ~ 1136003 (-) True CI01000092_01122961_01135673
CI01000092_01186569_01191243.mRNA mRNA upstream 130399 1186121 ~ 1191533 (-) True CI01000092_01186569_01191243
TU345843 other upstream 2603 1058325 ~ 1058864 (-) False G304369
TU345840 other upstream 2645 1058367 ~ 1058920 (-) False G304369
TU345842 other upstream 2645 1058367 ~ 1058864 (-) True G304369
TU345834 other upstream 30940 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345950 other upstream 176178 1231900 ~ 1232292 (-) True G304459

Expression Profile