RNA id: TU345838



Basic Information


Item Value
RNA id TU345838
length 282
lncRNA type intronic
GC content 0.61
exon number 1
gene id G304369
representative False

Chromosome Information


Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 1058325 ~ 1058920 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCTGCTTGGTGGCCCGGAGAGCGAGATCTGTGGTGCGGCGCAGCTCAGCCACCGCATCAGGGGACAAACCCTGCCCCTGATCCAGGTCCTTCAGCAAGTCAGCCTGGTAGGCTTGCAACACCGCCATAGTGTGCAAAGCCGCGCCAGCCTGACCTGCAGCAGCATATGCTCTGCCGTTCAGACGAGATGTCAGTTTAAGGGGTCTGGACGGCAGAACCGGAGCTTTCAGTGTCGGTGCCCTGCCCGTGACGAGATAGTTGGCAAACGTCTCGTCAATGGGCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU345738 lncRNA downstream 142834 915291 ~ 915491 (-) True G304274
TU345733 lncRNA downstream 148012 909925 ~ 910313 (-) True G304269
TU345732 lncRNA downstream 153637 904386 ~ 904688 (-) True G304268
TU345729 lncRNA downstream 156693 901200 ~ 901632 (-) True G304265
TU345728 lncRNA downstream 163901 893742 ~ 894424 (-) True G304264
TU345845 lncRNA upstream 1253 1059859 ~ 1060609 (-) True G304371
TU345846 lncRNA upstream 2035 1060641 ~ 1061328 (-) True G304372
TU345853 lncRNA upstream 12804 1071410 ~ 1071997 (-) True G304378
TU345856 lncRNA upstream 17692 1076298 ~ 1076529 (-) True G304380
TU345833 lncRNA upstream 25907 1084513 ~ 1085394 (-) True G304365
CI01000092_00847979_00851661.mRNA mRNA downstream 206664 847298 ~ 851661 (-) True CI01000092_00847979_00851661
CI01000092_00579690_00648591.mRNA mRNA downstream 409734 579190 ~ 648591 (-) True CI01000092_00579690_00648591
CI01000092_00508717_00509840.mRNA mRNA downstream 547997 508594 ~ 510328 (-) True CI01000092_00508717_00509840
CI01000092_00506401_00508318.mRNA mRNA downstream 549801 505739 ~ 508524 (-) True CI01000092_00506401_00508318
CI01000092_00418628_00428488.mRNA mRNA downstream 629705 417822 ~ 428620 (-) True CI01000092_00418628_00428488
CI01000092_01086701_01097333.mRNA mRNA upstream 27798 1086404 ~ 1097333 (-) False CI01000092_01086701_01097333
CI01000092_01099061_01100011.mRNA mRNA upstream 39578 1098184 ~ 1100021 (-) True CI01000092_01099061_01100011
CI01000092_01110360_01113717.mRNA mRNA upstream 51673 1110279 ~ 1115228 (-) True CI01000092_01110360_01113717
CI01000092_01122961_01135673.mRNA mRNA upstream 64216 1122822 ~ 1136003 (-) True CI01000092_01122961_01135673
CI01000092_01186569_01191243.mRNA mRNA upstream 127515 1186121 ~ 1191533 (-) True CI01000092_01186569_01191243
TU345836 other downstream 2603 1055304 ~ 1055722 (-) True G304368
TU345834 other upstream 28056 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345950 other upstream 173294 1231900 ~ 1232292 (-) True G304459
TU347441 other upstream 1665988 2724594 ~ 2724944 (-) True G305772
TU347691 other upstream 2619268 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 3437808 4496414 ~ 4505953 (-) True G306679

Expression Profile