RNA id: TU345846


Basic Information

Item Value
RNA id TU345846
length 688
lncRNA type intronic
GC content 0.49
exon number 1
gene id G304372
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 1060641 ~ 1061328 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCAAACATACTCCAGTGTGTTCAAAAAAGGCAGCCCATAGGCCTAGCAACCTCTAATACACACGGCGTAAGTCTCGTGGCCGTTTCCAGGAGCACAAAAGATCCACCCTAGGCGCTAGGTGGCTCTTAGCTCAACTAGATTAGAATCAGACTCAGGGAGGCAGATGTAGGTTAAACCAACCTTCCGTAGGGTTTCACTACCATAATCAACCTGAGGGGCTAGCCACTGGGAATACTCGGTAAAAGCACCTTGTTACTCTCACAGCGAGAGGAGTACATGACTGAACTCCACATATTACACCGGAGGCCGAAGTAGGCCTGCCTTAGTAAACACGTGGCATCAGCAAGTGGCTACCATAACCATACCACCCAAAGGCCATGTATTAGAAGTTTCCAAGATGATTATTACATGAAAAACGTTGCCGAACATCGTGAACAGGCCTGTTAGGGCCTATCCGTCAGCGATGGGGCATGGCCGATGGTGGCATGGTTTCCCAGGCATCCTGCCAACAAGTCGACTAGAAAAGGAGGCCTTAAGGGGCCTCCATTCCAGCATCAAGTGGCGATCAGCCTGCTCACAGATTAAAAAACACAAACTGTGCCATCATGTAAACTAAAAAAGGTGGCCTGAAGGGGCCTGCCAATTCAATAACACGTGGCTTCAGCTCGTGAATATAAGGGAACCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345845 lncRNA downstream 32 1059859 ~ 1060609 (-) True G304371
TU345838 lncRNA downstream 2035 1058325 ~ 1058606 (-) False G304369
TU345738 lncRNA downstream 145150 915291 ~ 915491 (-) True G304274
TU345733 lncRNA downstream 150328 909925 ~ 910313 (-) True G304269
TU345732 lncRNA downstream 155953 904386 ~ 904688 (-) True G304268
TU345853 lncRNA upstream 10082 1071410 ~ 1071997 (-) True G304378
TU345856 lncRNA upstream 14970 1076298 ~ 1076529 (-) True G304380
TU345833 lncRNA upstream 23185 1084513 ~ 1085394 (-) True G304365
TU345920 lncRNA upstream 155669 1216997 ~ 1217247 (-) True G304432
TU345921 lncRNA upstream 156526 1217854 ~ 1218144 (-) True G304433
CI01000092_00847979_00851661.mRNA mRNA downstream 208980 847298 ~ 851661 (-) True CI01000092_00847979_00851661
CI01000092_00579690_00648591.mRNA mRNA downstream 412050 579190 ~ 648591 (-) True CI01000092_00579690_00648591
CI01000092_00508717_00509840.mRNA mRNA downstream 550313 508594 ~ 510328 (-) True CI01000092_00508717_00509840
CI01000092_00506401_00508318.mRNA mRNA downstream 552117 505739 ~ 508524 (-) True CI01000092_00506401_00508318
CI01000092_00418628_00428488.mRNA mRNA downstream 632021 417822 ~ 428620 (-) True CI01000092_00418628_00428488
CI01000092_01086701_01097333.mRNA mRNA upstream 25076 1086404 ~ 1097333 (-) False CI01000092_01086701_01097333
CI01000092_01099061_01100011.mRNA mRNA upstream 36856 1098184 ~ 1100021 (-) True CI01000092_01099061_01100011
CI01000092_01110360_01113717.mRNA mRNA upstream 48951 1110279 ~ 1115228 (-) True CI01000092_01110360_01113717
CI01000092_01122961_01135673.mRNA mRNA upstream 61494 1122822 ~ 1136003 (-) True CI01000092_01122961_01135673
CI01000092_01186569_01191243.mRNA mRNA upstream 124793 1186121 ~ 1191533 (-) True CI01000092_01186569_01191243
TU345840 other downstream 1721 1058367 ~ 1058920 (-) False G304369
TU345843 other downstream 1777 1058325 ~ 1058864 (-) False G304369
TU345842 other downstream 1777 1058367 ~ 1058864 (-) True G304369
TU345836 other downstream 4919 1055304 ~ 1055722 (-) True G304368
TU345834 other upstream 25334 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345950 other upstream 170572 1231900 ~ 1232292 (-) True G304459
TU347441 other upstream 1663266 2724594 ~ 2724944 (-) True G305772
TU347691 other upstream 2616546 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 3435086 4496414 ~ 4505953 (-) True G306679

Expression Profile