RNA id: TU345856


Basic Information

Item Value
RNA id TU345856
length 232
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G304380
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 1076298 ~ 1076529 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTACACTAGGTGAAAATAGCGATAGATTCTATTTACACCATGTAAAAGTATCAGTTCTTTGCAATAAGAGTAAAGATGCTATCTATACTTTATATTGGCAGATACTATTTGCACCTCAGTATTTTTGTACATTAACAGGATGCAATAAGAGTGTAAATGATTATATTTATTAAAATTATTAAATGGATGCTGCCTTATTGGAAGAATAAAACCCCTCCCTACACCTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345853 lncRNA downstream 4301 1071410 ~ 1071997 (-) True G304378
TU345846 lncRNA downstream 14970 1060641 ~ 1061328 (-) True G304372
TU345845 lncRNA downstream 15689 1059859 ~ 1060609 (-) True G304371
TU345838 lncRNA downstream 17692 1058325 ~ 1058606 (-) False G304369
TU345738 lncRNA downstream 160807 915291 ~ 915491 (-) True G304274
TU345833 lncRNA upstream 7984 1084513 ~ 1085394 (-) True G304365
TU345920 lncRNA upstream 140468 1216997 ~ 1217247 (-) True G304432
TU345921 lncRNA upstream 141325 1217854 ~ 1218144 (-) True G304433
TU345924 lncRNA upstream 145337 1221866 ~ 1222070 (-) True G304436
TU345904 lncRNA upstream 148545 1225074 ~ 1225310 (-) True G304423
CI01000092_01054403_01069241.mRNA mRNA downstream 7057 1054346 ~ 1069241 (-) True CI01000092_01054403_01069241
CI01000092_00847979_00851661.mRNA mRNA downstream 224637 847298 ~ 851661 (-) True CI01000092_00847979_00851661
CI01000092_00579690_00648591.mRNA mRNA downstream 427707 579190 ~ 648591 (-) True CI01000092_00579690_00648591
CI01000092_00508717_00509840.mRNA mRNA downstream 565970 508594 ~ 510328 (-) True CI01000092_00508717_00509840
CI01000092_00506401_00508318.mRNA mRNA downstream 567774 505739 ~ 508524 (-) True CI01000092_00506401_00508318
CI01000092_01086701_01097333.mRNA mRNA upstream 9875 1086404 ~ 1097333 (-) False CI01000092_01086701_01097333
CI01000092_01099061_01100011.mRNA mRNA upstream 21655 1098184 ~ 1100021 (-) True CI01000092_01099061_01100011
CI01000092_01110360_01113717.mRNA mRNA upstream 33750 1110279 ~ 1115228 (-) True CI01000092_01110360_01113717
CI01000092_01122961_01135673.mRNA mRNA upstream 46293 1122822 ~ 1136003 (-) True CI01000092_01122961_01135673
CI01000092_01186569_01191243.mRNA mRNA upstream 109592 1186121 ~ 1191533 (-) True CI01000092_01186569_01191243
TU345840 other downstream 17378 1058367 ~ 1058920 (-) False G304369
TU345843 other downstream 17434 1058325 ~ 1058864 (-) False G304369
TU345842 other downstream 17434 1058367 ~ 1058864 (-) True G304369
TU345836 other downstream 20576 1055304 ~ 1055722 (-) True G304368
TU345834 other upstream 10133 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345950 other upstream 155371 1231900 ~ 1232292 (-) True G304459
TU347441 other upstream 1648065 2724594 ~ 2724944 (-) True G305772
TU347691 other upstream 2601345 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 3419885 4496414 ~ 4505953 (-) True G306679

Expression Profile