RNA id: TU345921


Basic Information

Item Value
RNA id TU345921
length 291
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G304433
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 1217854 ~ 1218144 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATACACAACACGCTGTGAGTAAGTAAGACATGCTGCTGCTGTACAATATAGCGTACATGAATTACCCGTAGCAGATCTATACAGGTGGAGCTGGCGAAGGTGGAGGGTTTCTGAAGCGAGCTGCACTGCTAAGGCAAATGCTACTCATGTATTTGAAGATTGAGCATGCAAGCTCGTTGGCTACTAATAGAGCAGGAACCAATCATCTGTGTCCTATAGATAATGATGTGATTACGAGTAGGCTGAGTTAAAGGACCTGCCCATTAGAGTTTCATGCCAGAACTTTGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345920 lncRNA downstream 607 1216997 ~ 1217247 (-) True G304432
TU345833 lncRNA downstream 132460 1084513 ~ 1085394 (-) True G304365
TU345856 lncRNA downstream 141325 1076298 ~ 1076529 (-) True G304380
TU345853 lncRNA downstream 145857 1071410 ~ 1071997 (-) True G304378
TU345846 lncRNA downstream 156526 1060641 ~ 1061328 (-) True G304372
TU345924 lncRNA upstream 3722 1221866 ~ 1222070 (-) True G304436
TU345904 lncRNA upstream 6930 1225074 ~ 1225310 (-) True G304423
TU345949 lncRNA upstream 12970 1231114 ~ 1231434 (-) True G304458
TU345959 lncRNA upstream 53479 1271623 ~ 1271950 (-) True G304468
TU345960 lncRNA upstream 53999 1272143 ~ 1272360 (-) True G304469
CI01000092_01201434_01205306.mRNA mRNA downstream 11322 1199874 ~ 1206532 (-) True CI01000092_01201434_01205306
CI01000092_01186569_01191243.mRNA mRNA downstream 26321 1186121 ~ 1191533 (-) True CI01000092_01186569_01191243
CI01000092_01122961_01135673.mRNA mRNA downstream 81851 1122822 ~ 1136003 (-) True CI01000092_01122961_01135673
CI01000092_01110360_01113717.mRNA mRNA downstream 102626 1110279 ~ 1115228 (-) True CI01000092_01110360_01113717
CI01000092_01099061_01100011.mRNA mRNA downstream 117833 1098184 ~ 1100021 (-) True CI01000092_01099061_01100011
CI01000092_01266540_01267541.mRNA mRNA upstream 48214 1266358 ~ 1268479 (-) True CI01000092_01266540_01267541
CI01000092_01270604_01273133.mRNA mRNA upstream 51601 1269745 ~ 1273133 (-) True CI01000092_01270604_01273133
CI01000092_01307631_01315805.mRNA mRNA upstream 89171 1307315 ~ 1315805 (-) True CI01000092_01307631_01315805
CI01000092_01317932_01336911.mRNA mRNA upstream 99630 1317774 ~ 1338546 (-) True CI01000092_01317932_01336911
CI01000092_01352766_01386659.mRNA mRNA upstream 134601 1352745 ~ 1386659 (-) True CI01000092_01352766_01386659
TU345834 other downstream 120936 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 158934 1058367 ~ 1058920 (-) False G304369
TU345843 other downstream 158990 1058325 ~ 1058864 (-) False G304369
TU345842 other downstream 158990 1058367 ~ 1058864 (-) True G304369
TU345836 other downstream 162132 1055304 ~ 1055722 (-) True G304368
TU345950 other upstream 13756 1231900 ~ 1232292 (-) True G304459
TU347441 other upstream 1506450 2724594 ~ 2724944 (-) True G305772
TU347691 other upstream 2459730 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 3278270 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 3586251 4804395 ~ 4865973 (-) True G306792

Expression Profile