RNA id: TU345924


Basic Information

Item Value
RNA id TU345924
length 205
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G304436
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 1221866 ~ 1222070 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAACTGCCTGAGTTCACTCAAGGGCAGGACAGCGGCCCCACTGAAACTTTTTCACAGGCTCCTGGGGCATATGGCATCCGCAGCCACAGTCACGCCACTCGGATTGCTTCATATGAGGCCGCTTCAGCACTGGCTTCACAGCCGGGTCCCGAGATGGGCATGACAACGCGGTACGTTCTGTTTCCCTGTGACACCGAACTGCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345921 lncRNA downstream 3722 1217854 ~ 1218144 (-) True G304433
TU345920 lncRNA downstream 4619 1216997 ~ 1217247 (-) True G304432
TU345833 lncRNA downstream 136472 1084513 ~ 1085394 (-) True G304365
TU345856 lncRNA downstream 145337 1076298 ~ 1076529 (-) True G304380
TU345853 lncRNA downstream 149869 1071410 ~ 1071997 (-) True G304378
TU345904 lncRNA upstream 3004 1225074 ~ 1225310 (-) True G304423
TU345949 lncRNA upstream 9044 1231114 ~ 1231434 (-) True G304458
TU345959 lncRNA upstream 49553 1271623 ~ 1271950 (-) True G304468
TU345960 lncRNA upstream 50073 1272143 ~ 1272360 (-) True G304469
TU345968 lncRNA upstream 64158 1286228 ~ 1286555 (-) True G304477
CI01000092_01201434_01205306.mRNA mRNA downstream 15334 1199874 ~ 1206532 (-) True CI01000092_01201434_01205306
CI01000092_01186569_01191243.mRNA mRNA downstream 30333 1186121 ~ 1191533 (-) True CI01000092_01186569_01191243
CI01000092_01122961_01135673.mRNA mRNA downstream 85863 1122822 ~ 1136003 (-) True CI01000092_01122961_01135673
CI01000092_01110360_01113717.mRNA mRNA downstream 106638 1110279 ~ 1115228 (-) True CI01000092_01110360_01113717
CI01000092_01099061_01100011.mRNA mRNA downstream 121845 1098184 ~ 1100021 (-) True CI01000092_01099061_01100011
CI01000092_01266540_01267541.mRNA mRNA upstream 44288 1266358 ~ 1268479 (-) True CI01000092_01266540_01267541
CI01000092_01270604_01273133.mRNA mRNA upstream 47675 1269745 ~ 1273133 (-) True CI01000092_01270604_01273133
CI01000092_01307631_01315805.mRNA mRNA upstream 85245 1307315 ~ 1315805 (-) True CI01000092_01307631_01315805
CI01000092_01317932_01336911.mRNA mRNA upstream 95704 1317774 ~ 1338546 (-) True CI01000092_01317932_01336911
CI01000092_01352766_01386659.mRNA mRNA upstream 130675 1352745 ~ 1386659 (-) True CI01000092_01352766_01386659
TU345834 other downstream 124948 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 162946 1058367 ~ 1058920 (-) False G304369
TU345843 other downstream 163002 1058325 ~ 1058864 (-) False G304369
TU345842 other downstream 163002 1058367 ~ 1058864 (-) True G304369
TU345836 other downstream 166144 1055304 ~ 1055722 (-) True G304368
TU345950 other upstream 9830 1231900 ~ 1232292 (-) True G304459
TU347441 other upstream 1502524 2724594 ~ 2724944 (-) True G305772
TU347691 other upstream 2455804 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 3274344 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 3582325 4804395 ~ 4865973 (-) True G306792

Expression Profile