RNA id: TU346284


Basic Information

Item Value
RNA id TU346284
length 1228
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G304769
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 1972782 ~ 1977219 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACCTAATTTAAAAAAACTTTTTCTCTGCCTCTGAACATGCTCTGTAAAGAGTTAGAAGAATCAAAGTTATTTTCAGATAACAGATTACACACAATCTTCTGTGTCTGCTCCAGCACTTCCTACAGAAACAGAGACTTTTTGCATTAGTTTTGTCAGCACAAACAGGGATTCAAACCACATCACCTCAAAAATCGTCTACCACCCTGAACCAATAACAGGCGTCTGTGTAGATTGTCACAATTTTGTCAGTCATCAGTTTACCCGCTCCAGTGAGGGTCACAAGCTCATCTGCTTATGCCGAATAATTAGAGGACAGCAGCCCTGAAACTAACACTTCACATTCCATGGTCACAACTTATCCTTCGCAATTCAGACCTATTGTTTTGTCTCTCAAGGCAGAGTCATCTACAAACAACACGTTCTCACAGTTATCAAGTGGTTTGTCTCGCAGGTCAGGTCATGGTGTACAGACCTGATCAAGGATGGTCAAACAACAATGATGTTTCTTTCCCATCCTCCTTTGTTCTCCCACCAGTCCTTCATACTGTGAATGTTACTGGGCTCTCTGGATAATTTTTATTGCCAGTGTGTCACTGTTTCTCTGCCATCAAGTCTACAACATTTTACATTTATCATTATGACCACACACTGCAGTTGGGCTCAATTCCCAACAAACAAATTGTTTCAGCTTGTATGACGCAGCTTAAATTTCCCCTCTAGAAATTATCTGTACTGCTGCATGCGCAACCTCAATTCCTAGAAACCCCTCGACCACAACCACAGAGTCAGCCAGAGCCACCAATATGGTTCGTCCCGTTTCCTAATTTTTCTTAATTTACCAAATCACACTTACTTCATTCTTAATCCCAAAATTTCAAACTTACTCTTAATTCCCCATAAAATTTAGATTTATCTCTTACCAGAGAGTTGTGTAGCCACCTGGGTTCGTTTACTGATTCCAGTGGTGTCCCCTTCTGGACCCTGGCGGTCGGCCCCTCATCCCTCAATCTATTCGGGGTAGGGCTGAGACTACTAAGTCCAGGATGATCAGTCACCGTCCGCTCTCGGGTCCAAAAGGCACATCCAAGGAATCCCACCTTCTGACACCAAATTGTTGTGGCAAAAAAATCAACACTGACTCTACTGCATAAGAGATAAACACATCCAATTGTCTTTCAAAAGTTTTATTTCTTGCAAGAAAGGTCAAACAGTCAACAAGCACACAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346281 lncRNA downstream 7299 1965231 ~ 1965483 (-) True G304768
TU346279 lncRNA downstream 8138 1964055 ~ 1964644 (-) False CI01000092_01964262_01964863
TU346280 lncRNA downstream 8295 1964432 ~ 1964487 (-) True G304767
TU346264 lncRNA downstream 57315 1911977 ~ 1915467 (-) True G304753
TU346262 lncRNA downstream 73304 1899180 ~ 1899478 (-) True G304752
TU346294 lncRNA upstream 27527 2004746 ~ 2005197 (-) True G304777
TU346315 lncRNA upstream 71906 2049125 ~ 2049332 (-) True G304795
TU346379 lncRNA upstream 148171 2125390 ~ 2161014 (-) True G304853
TU346428 lncRNA upstream 255300 2232519 ~ 2232949 (-) True G304895
TU346431 lncRNA upstream 261518 2238737 ~ 2239195 (-) True G304898
CI01000092_01964262_01964863.mRNA mRNA downstream 7919 1964079 ~ 1964863 (-) False CI01000092_01964262_01964863
CI01000092_01908289_01908682.mRNA mRNA downstream 64091 1907311 ~ 1908691 (-) True CI01000092_01908289_01908682
CI01000092_01866991_01869504.mRNA mRNA downstream 103278 1866901 ~ 1869504 (-) False CI01000092_01866991_01869504
CI01000092_01802304_01802591.mRNA mRNA downstream 168543 1800795 ~ 1804239 (-) True CI01000092_01802304_01802591
CI01000092_01588502_01599337.mRNA mRNA downstream 373445 1588473 ~ 1599337 (-) True CI01000092_01588502_01599337
CI01000092_01981235_01981861.mRNA mRNA upstream 3244 1980463 ~ 1981861 (-) True CI01000092_01981235_01981861
CI01000092_02026073_02027161.mRNA mRNA upstream 48843 2026062 ~ 2027525 (-) True CI01000092_02026073_02027161
CI01000092_02039063_02039980.mRNA mRNA upstream 61621 2038840 ~ 2040333 (-) True CI01000092_02039063_02039980
CI01000092_02043716_02044633.mRNA mRNA upstream 66172 2043391 ~ 2044672 (-) True CI01000092_02043716_02044633
CI01000092_02055330_02056247.mRNA mRNA upstream 77798 2055017 ~ 2056286 (-) True CI01000092_02055330_02056247
TU345950 other downstream 740490 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 875864 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 913862 1058367 ~ 1058920 (-) False G304369
TU345843 other downstream 913918 1058325 ~ 1058864 (-) False G304369
TU347441 other upstream 747375 2724594 ~ 2724944 (-) True G305772
TU347691 other upstream 1700655 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 2519195 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 2827176 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 3176449 5153668 ~ 5154133 (-) True G306902

Expression Profile