RNA id: TU347441


Basic Information

Item Value
RNA id TU347441
length 351
RNA type TUCP
GC content 0.56
exon number 1
gene id G305772
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2724594 ~ 2724944 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTATGTTGTTGTTTTGTTTTCATTCATGAGGACGACTGCCGCTTTACTTTTGTTTTGCCGGTTCCCACCTCCTTCCTCCCTGAGCCGAAACCCAGAAGGAAGGAGGAACGCACTGCCAAAGATCCCTCACCGCTGTGGGAAAGGGGGACTCACTGCCGGGTGCGCAAAGCCGGAGGAGTTGTCGCCGTCCACCAAGCAGCGGAGGAGTGTCGAGCCGTCCACCGAGGGGTATCCGGGGCCACCACCAGGCATCGCGGAGGAGTTCACCCAGCTGGTGGAAGACCGGATGGCAGTGTGTTTTGGGAACCAGACAAAGACTTATTTTTCTTCTCTCCCCTCTCTCGTCTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347437 lncRNA downstream 5443 2718875 ~ 2719151 (-) True G305768
TU347436 lncRNA downstream 6390 2718002 ~ 2718204 (-) True G305767
TU347403 lncRNA downstream 234982 2489255 ~ 2489612 (-) True G305737
TU347402 lncRNA downstream 244429 2479939 ~ 2480165 (-) True G305736
TU346623 lncRNA downstream 246050 2478344 ~ 2478544 (-) True G305069
TU347442 lncRNA upstream 2493 2727437 ~ 2727705 (-) True G305773
TU347444 lncRNA upstream 7689 2732633 ~ 2732835 (-) True G305775
TU347445 lncRNA upstream 8597 2733541 ~ 2733796 (-) True G305776
TU347449 lncRNA upstream 17622 2742566 ~ 2742814 (-) True G305780
TU347450 lncRNA upstream 22468 2747412 ~ 2747697 (-) True G305781
CI01000092_02673622_02702051.mRNA mRNA downstream 22543 2673524 ~ 2702051 (-) True CI01000092_02673622_02702051
CI01000092_02616905_02658519.mRNA mRNA downstream 65720 2616818 ~ 2658874 (-) True CI01000092_02616905_02658519
CI01000092_02602158_02608405.mRNA mRNA downstream 116189 2601686 ~ 2608405 (-) True CI01000092_02602158_02608405
CI01000092_02570666_02599836.mRNA mRNA downstream 124758 2570196 ~ 2599836 (-) True CI01000092_02570666_02599836
CI01000092_02522204_02531634.mRNA mRNA downstream 192960 2522123 ~ 2531634 (-) True CI01000092_02522204_02531634
CI01000092_02750776_02767145.mRNA mRNA upstream 25796 2750740 ~ 2770053 (-) True CI01000092_02750776_02767145
CI01000092_02771083_02773297.mRNA mRNA upstream 46108 2771052 ~ 2777076 (-) True CI01000092_02771083_02773297
CI01000092_02839795_02842383.mRNA mRNA upstream 114815 2839759 ~ 2842409 (-) True CI01000092_02839795_02842383
CI01000092_02851435_02865690.mRNA mRNA upstream 125498 2850442 ~ 2865690 (-) True CI01000092_02851435_02865690
CI01000092_02868492_02873015.mRNA mRNA upstream 143529 2868473 ~ 2873015 (-) True CI01000092_02868492_02873015
TU345950 other downstream 1492302 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 1627676 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 1665674 1058367 ~ 1058920 (-) False G304369
TU345843 other downstream 1665730 1058325 ~ 1058864 (-) False G304369
TU345842 other downstream 1665730 1058367 ~ 1058864 (-) True G304369
TU347691 other upstream 952930 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 1771470 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 2079451 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 2428724 5153668 ~ 5154133 (-) True G306902

Expression Profile