RNA id: TU347450


Basic Information

Item Value
RNA id TU347450
length 286
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G305781
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2747412 ~ 2747697 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGCTGGATCAGGTTAACAAGTCGCTATATTCGTCACAACGCGCTTTCTTAGAAAAAAGTCGCAAAAGGGGTCTGAAAAGGCGCTAAGTTGGCAACACTGATGCAGCTTTCCGTCTCCAGGTCCCAGCCCGCCGCTGTCCAAACCGGCGTTATGGCAATTTTGCACCGGCCGGAGGCAATTACCAAACTGGTTCCGCGTGCGTATCACACCAATGTACATATTTTGCGACAGCAAATCAAAGTTATTAATTATTTAGGCTTTATTAAAAATAAACTGGTAGTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347449 lncRNA downstream 4598 2742566 ~ 2742814 (-) True G305780
TU347445 lncRNA downstream 13616 2733541 ~ 2733796 (-) True G305776
TU347444 lncRNA downstream 14577 2732633 ~ 2732835 (-) True G305775
TU347442 lncRNA downstream 19707 2727437 ~ 2727705 (-) True G305773
TU347437 lncRNA downstream 28261 2718875 ~ 2719151 (-) True G305768
TU347506 lncRNA upstream 40785 2788482 ~ 2788852 (-) True G305831
TU347510 lncRNA upstream 48989 2796686 ~ 2796955 (-) True G305835
TU347511 lncRNA upstream 52933 2800630 ~ 2802757 (-) True G305836
TU347513 lncRNA upstream 65103 2812800 ~ 2813059 (-) True G305838
TU347517 lncRNA upstream 73757 2821454 ~ 2821745 (-) True G305842
CI01000092_02673622_02702051.mRNA mRNA downstream 45361 2673524 ~ 2702051 (-) True CI01000092_02673622_02702051
CI01000092_02616905_02658519.mRNA mRNA downstream 88538 2616818 ~ 2658874 (-) True CI01000092_02616905_02658519
CI01000092_02602158_02608405.mRNA mRNA downstream 139007 2601686 ~ 2608405 (-) True CI01000092_02602158_02608405
CI01000092_02570666_02599836.mRNA mRNA downstream 147576 2570196 ~ 2599836 (-) True CI01000092_02570666_02599836
CI01000092_02522204_02531634.mRNA mRNA downstream 215778 2522123 ~ 2531634 (-) True CI01000092_02522204_02531634
CI01000092_02750776_02767145.mRNA mRNA upstream 3043 2750740 ~ 2770053 (-) True CI01000092_02750776_02767145
CI01000092_02771083_02773297.mRNA mRNA upstream 23355 2771052 ~ 2777076 (-) True CI01000092_02771083_02773297
CI01000092_02839795_02842383.mRNA mRNA upstream 92062 2839759 ~ 2842409 (-) True CI01000092_02839795_02842383
CI01000092_02851435_02865690.mRNA mRNA upstream 102745 2850442 ~ 2865690 (-) True CI01000092_02851435_02865690
CI01000092_02868492_02873015.mRNA mRNA upstream 120776 2868473 ~ 2873015 (-) True CI01000092_02868492_02873015
TU347441 other downstream 22468 2724594 ~ 2724944 (-) True G305772
TU345950 other downstream 1515120 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 1650494 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 1688492 1058367 ~ 1058920 (-) False G304369
TU347691 other upstream 930177 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 1748717 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 2056698 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 2405971 5153668 ~ 5154133 (-) True G306902

Expression Profile