RNA id: TCONS_00017580


Basic Information

Item Value
RNA id TCONS_00017580
length 585
RNA type mRNA
GC content 0.42
exon number 3
gene id XLOC_008890
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 722475 ~ 1003553 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGAAGACGTGACGTCATACGACTGCGCCGCGTTCCTGCATACTGATTCGGCTGGATACAGagtgtgtaaacacacacagagaaccAGAttattataaagatggcgtttattaaaaaGGAGAGTGAAGACatcaagattgaagaaacattcacagtcaatcatgaagagactgaagaagctttcagagtcaaacatgaagatcctgaggaacaaacagCTTCAGCTGCAATGGCACTCAAAGAAGAGAATGGAGAAATGAATGTAATGGAAGAGAGAGATCAGTTTGAGAAAGACGATTTCGTGGAAAACCCTATTAAGACTGAAGCATCTTCATCTGGAGGAACACTTCAGGAAACTGAATCTAATAATCTCTTCGCGTGCCAacaatgtggaaaaagcttcAATCACAAATATAAACTCAAGAACCACCTTAAAATCCACACAGGAGATAAACCCTTCAAATGCAAGCAGTGCGGAAAGACTTTCATTCAAAAGGGCAACCTCAATTCCCACATGAaagttcacaccggagagaagtcTTTCACATGCGagcagtgtgggaagagtttcaccaCAAAGGGCA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000156624

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019103 lncRNA downstream 4761 869961 ~ 909037 (-) True XLOC_008896
TCONS_00019105 lncRNA downstream 5491 877204 ~ 908307 (-) True XLOC_008898
TCONS_00019106 lncRNA downstream 12919 899089 ~ 900879 (-) True XLOC_008899
TCONS_00019104 lncRNA downstream 37813 875328 ~ 875985 (-) True XLOC_008897
TCONS_00019102 lncRNA downstream 65006 837015 ~ 848792 (-) True XLOC_008895
TCONS_00019107 lncRNA upstream 68870 986144 ~ 993389 (-) False XLOC_008902
TCONS_00019108 lncRNA upstream 68870 986144 ~ 993540 (-) False XLOC_008902
TCONS_00019109 lncRNA upstream 68870 986144 ~ 993587 (-) True XLOC_008902
TCONS_00019110 lncRNA upstream 90326 1007600 ~ 1008359 (-) True XLOC_008903
TCONS_00019111 lncRNA upstream 223171 1140445 ~ 1143069 (-) True XLOC_008908
TCONS_00017579 mRNA downstream 133299 765760 ~ 780499 (-) False XLOC_008890
TCONS_00017569 mRNA downstream 133326 722475 ~ 780472 (-) False XLOC_008890
TCONS_00017576 mRNA downstream 147783 749230 ~ 766015 (-) False XLOC_008890
TCONS_00017568 mRNA downstream 151476 722475 ~ 762322 (-) False XLOC_008890
TCONS_00017578 mRNA downstream 151479 758188 ~ 762319 (-) False XLOC_008890
TCONS_00017581 mRNA upstream 3024 920298 ~ 923981 (-) True XLOC_008900
TCONS_00017582 mRNA upstream 7926 925200 ~ 931848 (-) False XLOC_008890
TCONS_00017583 mRNA upstream 9251 926525 ~ 931815 (-) False XLOC_008890
TCONS_00017584 mRNA upstream 9254 926528 ~ 931815 (-) False XLOC_008890
TCONS_00017585 mRNA upstream 9364 926638 ~ 1001177 (-) False XLOC_008890
TCONS_00017537 other downstream 488042 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 564231 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 404516 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 917697 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1348695 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 1707754 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 1819109 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

//