RNA id: TU347687


Basic Information

Item Value
RNA id TU347687
length 1002
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G306010
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3676767 ~ 3677768 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGCGTCTCGTTCCCTATTCAGGGAACCAGGGTTACACAAGTAACCCGAGAAGTTTTCTCAAGTTTTACCTGTGGTAGAAATTCACCTGTAAAATAAAGTCAAACCACTCAGTTGTAAAAATGAATCAAAGTCTTATTCCAAATGAAGCTGGGCTGCTTCTCTGCAGAGAGCTACTAAAGTGAGCTCTACAACAAAATATATTTATTTAGTAAAATCATAACGATCATAACGAGCAGCAGAATTTTTATTATGCCACAGTCGCTGGCGCCGCTTCTTCCGGTCAAGTGTATGAGGTAACACAGCGCTGTTTATCATATTACATACATTTGACTGTGTTGAAAATATAACGTTATAACGTTACTCTGTGCATTCGCTCAGCGGCTGCTGTGAGACACTTGTTGCACACTGCAGTAGATAGATCGATTTTAGAATATCATATTAAAATTCTGGATGGCTTGTGTTGATAAATGCATGCAATTAATTTTAAAACATATTGTATGATGGAGAAAATGCTGTATTAGCTACTTGACAAAATATTTTTTTCTCTGAGGCATGATAAAAGCATGGTACTCGCAAAAAATCAAGAAAACTAGATTTAAACAATAAGACTAAAAGTGTTGATCTATATAACAACAATTAGTCTTCTGTCTATAAATGTAACTAAACAGTTGTTCCCTTGTCTAATAAAACATTAATATATTAAAGCATCTTTGGTGTTTCCATGGTAACCGAGGAAACCGAGGGTAACGCGGGTATAATGCCATTGACAGGCGACTCCTCACACATCCCAGAGCCTTGGTTAAAATTGCAATTTTCTCACGATTTACAAATAGTTGGAAACATTTGGGATATTGTAAGTACTCAACTGAACAAAATATATAACACTGGCCTAGTGGTTTTTGGATATTTACTGCAAAAATCTTACATATTGTGCCTTTAAAATACTCAGACATTTATGGTCATAAGAGTAACACCATTCAAATTTGTGAAGGGTTAACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347694 lncRNA downstream 2333 3671445 ~ 3674434 (-) True G306017
TU347485 lncRNA downstream 78038 3597328 ~ 3598729 (-) True G305810
TU347742 lncRNA downstream 85788 3590733 ~ 3590979 (-) True G306053
TU347737 lncRNA downstream 89658 3586867 ~ 3587109 (-) True G306051
TU347736 lncRNA downstream 99236 3577308 ~ 3577531 (-) True G306050
TU347697 lncRNA upstream 4495 3682263 ~ 3682615 (-) True CI01000092_03682820_03688497
TU347777 lncRNA upstream 47259 3725027 ~ 3725677 (-) True G306083
TU347795 lncRNA upstream 64712 3742480 ~ 3743248 (-) True G306089
TU347829 lncRNA upstream 337017 4014785 ~ 4015061 (-) True G306120
TU347830 lncRNA upstream 347996 4025764 ~ 4026076 (-) True G306121
CI01000092_03652598_03660979.mRNA mRNA downstream 15663 3652598 ~ 3661104 (-) True CI01000092_03652598_03660979
CI01000092_03630767_03645397.mRNA mRNA downstream 30611 3630626 ~ 3646156 (-) True CI01000092_03630767_03645397
CI01000092_03614992_03615400.mRNA mRNA downstream 59784 3614437 ~ 3616983 (-) True CI01000092_03614992_03615400
CI01000092_03600064_03611514.mRNA mRNA downstream 64619 3599914 ~ 3612148 (-) True CI01000092_03600064_03611514
CI01000092_03418301_03428309.mRNA mRNA downstream 248458 3418301 ~ 3428309 (-) True CI01000092_03418301_03428309
CI01000092_03682820_03688497.mRNA mRNA upstream 4646 3682414 ~ 3688531 (-) False CI01000092_03682820_03688497
CI01000092_03702024_03712418.mRNA mRNA upstream 23178 3700946 ~ 3712418 (-) True CI01000092_03702024_03712418
CI01000092_03733899_03743505.mRNA mRNA upstream 55189 3732957 ~ 3743557 (-) True CI01000092_03733899_03743505
CI01000092_03750015_03753913.mRNA mRNA upstream 71472 3749240 ~ 3753976 (-) True CI01000092_03750015_03753913
CI01000092_03762168_03785262.mRNA mRNA upstream 83052 3760820 ~ 3785407 (-) True CI01000092_03762168_03785262
TU347441 other downstream 951823 2724594 ~ 2724944 (-) True G305772
TU345950 other downstream 2444475 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 2579849 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 2617847 1058367 ~ 1058920 (-) False G304369
TU347691 other upstream 106 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 818646 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 1126627 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 1475900 5153668 ~ 5154133 (-) True G306902

Expression Profile