Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU347691 |
| length | 1615 |
| RNA type | TUCP |
| GC content | 0.50 |
| exon number | 1 |
| gene id | G306014 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000092 |
| NCBI id | null |
| chromosome length | 5370156 |
| location | 3677874 ~ 3679488 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU347687 | lncRNA | downstream | 106 | 3676767 ~ 3677768 (-) | True | G306010 |
| TU347694 | lncRNA | downstream | 3440 | 3671445 ~ 3674434 (-) | True | G306017 |
| TU347485 | lncRNA | downstream | 79145 | 3597328 ~ 3598729 (-) | True | G305810 |
| TU347742 | lncRNA | downstream | 86895 | 3590733 ~ 3590979 (-) | True | G306053 |
| TU347737 | lncRNA | downstream | 90765 | 3586867 ~ 3587109 (-) | True | G306051 |
| TU347697 | lncRNA | upstream | 2775 | 3682263 ~ 3682615 (-) | True | CI01000092_03682820_03688497 |
| TU347777 | lncRNA | upstream | 45539 | 3725027 ~ 3725677 (-) | True | G306083 |
| TU347795 | lncRNA | upstream | 62992 | 3742480 ~ 3743248 (-) | True | G306089 |
| TU347829 | lncRNA | upstream | 335297 | 4014785 ~ 4015061 (-) | True | G306120 |
| TU347830 | lncRNA | upstream | 346276 | 4025764 ~ 4026076 (-) | True | G306121 |
| CI01000092_03652598_03660979.mRNA | mRNA | downstream | 16770 | 3652598 ~ 3661104 (-) | True | CI01000092_03652598_03660979 |
| CI01000092_03630767_03645397.mRNA | mRNA | downstream | 31718 | 3630626 ~ 3646156 (-) | True | CI01000092_03630767_03645397 |
| CI01000092_03614992_03615400.mRNA | mRNA | downstream | 60891 | 3614437 ~ 3616983 (-) | True | CI01000092_03614992_03615400 |
| CI01000092_03600064_03611514.mRNA | mRNA | downstream | 65726 | 3599914 ~ 3612148 (-) | True | CI01000092_03600064_03611514 |
| CI01000092_03418301_03428309.mRNA | mRNA | downstream | 249565 | 3418301 ~ 3428309 (-) | True | CI01000092_03418301_03428309 |
| CI01000092_03682820_03688497.mRNA | mRNA | upstream | 2926 | 3682414 ~ 3688531 (-) | False | CI01000092_03682820_03688497 |
| CI01000092_03702024_03712418.mRNA | mRNA | upstream | 21458 | 3700946 ~ 3712418 (-) | True | CI01000092_03702024_03712418 |
| CI01000092_03733899_03743505.mRNA | mRNA | upstream | 53469 | 3732957 ~ 3743557 (-) | True | CI01000092_03733899_03743505 |
| CI01000092_03750015_03753913.mRNA | mRNA | upstream | 69752 | 3749240 ~ 3753976 (-) | True | CI01000092_03750015_03753913 |
| CI01000092_03762168_03785262.mRNA | mRNA | upstream | 81332 | 3760820 ~ 3785407 (-) | True | CI01000092_03762168_03785262 |
| TU347441 | other | downstream | 952930 | 2724594 ~ 2724944 (-) | True | G305772 |
| TU345950 | other | downstream | 2445582 | 1231900 ~ 1232292 (-) | True | G304459 |
| TU345834 | other | downstream | 2580956 | 1086662 ~ 1096918 (-) | True | CI01000092_01086701_01097333 |
| TU345840 | other | downstream | 2618954 | 1058367 ~ 1058920 (-) | False | G304369 |
| TU345843 | other | downstream | 2619010 | 1058325 ~ 1058864 (-) | False | G304369 |
| TU348466 | other | upstream | 816926 | 4496414 ~ 4505953 (-) | True | G306679 |
| TU348596 | other | upstream | 1124907 | 4804395 ~ 4865973 (-) | True | G306792 |
| TU348717 | other | upstream | 1474180 | 5153668 ~ 5154133 (-) | True | G306902 |
