RNA id: TCONS_00017584


Basic Information

Item Value
RNA id TCONS_00017584
length 1406
RNA type mRNA
GC content 0.44
exon number 3
gene id XLOC_008890
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 722475 ~ 1003553 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACTCTGCGCCGTGCTCTTGGGTATGTTGTGATTCTGCAGGAGAAAGGATTCTCTTCTTCATGTTGATAGTGTCTAAAAACACAAACTCCTGAAGCGACTGAggtataaagatggcgtttattaaagtgGAGAGTGAAGATATGatgattgaagaaacattcacagtcaaacatgaagagactgaagaagctttcagagtcaaacatgaagatcctgaggaacaaacagACCTGGTGGGACtcaaagaagaggaagaagaattGAATGACATGGAGGGGAAAGAGCAATGTGTGAAACATCAAGACTTTGTGAATGTAGAACAGTTTATTAAGATCGAACCGACTTCATCAGGAAAAACAGATCAGAAAAACAAACCTAATCAGCTGTTCatctgccaacagtgtggaagaGCTTTCAGTCGGAAGTATAAACTGAAGAATCACATgacgatccacactggagagaagcctttcacCTGTGAgcagtgtgggaagagcttcaaTTACAAGGAAAACCTTAATtaccacatgagagttcacaccggagagaggCCGTTCTCCTGTAaggagtgtggaaagagtttcgttCACAAAGCAGCTCTTAAATACCACACCagagttcacaccggagagaagcccttCACCTGTGAACTGTGTGGAAAGAGCTACGTTCACAAGGGAAACCTTAATTACCATAAGAGAGGTCATACTGGAGAGAGGCCGTTCACCTGCgagcagtgtggaaagagtttcgttCAGAAACACAAGCTTAATAACCACATCTtaagccacactggagagaaacccttcaAATGCCTGCAGTGTGGAACCGGTTTCAGTTGCAAAGCAAACCTTCACACCCACATGAAAGTCCATTctggagagaagccgttcacGTGCCagcagtgtgggaagagttacaCCAAAAAAAGCAACCTTAAAAAGCACATGAACGTCCACACTGGGGAGAACCTGTTCAGATGCGAGCGGTGCGGGCAGAGCTTCAGATATAAACATTCATTGGATTCTCATATACAAAAGAGAGAGCTCAGCGGAGGGAACTGTCTTATTAAATACACTGCAGAAAAGCCTTACGCGTGCCAGCTGTGTGATAAGagctataaaaacaaaacacactttGATTCCCACATGAAAATACacgctggagagaaaccgttcccCTGTGATCAGTGTGGAGGGAGCTTCAGCAATAAAGCAGCCCTTGGCTCACACATGAAGGTTCACATTGGTGAGTCCTCACACTCGGTAAATGCACAGAAATCTGTTGATCACTAATGACAAGTGATTCGATTGTGATTTGAGAAGGGATTCGATTGGTTGAGGGTTTTTATCCATGCATTGCATGCACACAGtctataattaaacaatacagtCAAACAACCATG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5253 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000102239

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019103 lncRNA downstream 17491 869961 ~ 909037 (-) True XLOC_008896
TCONS_00019105 lncRNA downstream 18221 877204 ~ 908307 (-) True XLOC_008898
TCONS_00019106 lncRNA downstream 25649 899089 ~ 900879 (-) True XLOC_008899
TCONS_00019104 lncRNA downstream 50543 875328 ~ 875985 (-) True XLOC_008897
TCONS_00019102 lncRNA downstream 77736 837015 ~ 848792 (-) True XLOC_008895
TCONS_00019107 lncRNA upstream 54329 986144 ~ 993389 (-) False XLOC_008902
TCONS_00019108 lncRNA upstream 54329 986144 ~ 993540 (-) False XLOC_008902
TCONS_00019109 lncRNA upstream 54329 986144 ~ 993587 (-) True XLOC_008902
TCONS_00019110 lncRNA upstream 75785 1007600 ~ 1008359 (-) True XLOC_008903
TCONS_00019111 lncRNA upstream 208630 1140445 ~ 1143069 (-) True XLOC_008908
TCONS_00017581 mRNA downstream 2547 920298 ~ 923981 (-) True XLOC_008900
TCONS_00017580 mRNA downstream 9254 913798 ~ 917274 (-) False XLOC_008890
TCONS_00017570 mRNA downstream 10893 722475 ~ 915635 (-) False XLOC_008890
TCONS_00017579 mRNA downstream 146029 765760 ~ 780499 (-) False XLOC_008890
TCONS_00017569 mRNA downstream 146056 722475 ~ 780472 (-) False XLOC_008890
TCONS_00017586 mRNA upstream 10716 942531 ~ 952891 (-) False XLOC_008901
TCONS_00017587 mRNA upstream 10808 942623 ~ 945804 (-) False XLOC_008901
TCONS_00017588 mRNA upstream 14904 946719 ~ 951118 (-) True XLOC_008901
TCONS_00017589 mRNA upstream 67024 998839 ~ 1003553 (-) True XLOC_008890
TCONS_00017590 mRNA upstream 85622 1017437 ~ 1022436 (-) True XLOC_008904
TCONS_00017537 other downstream 500772 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 576961 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 389975 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 903156 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1334154 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 1693213 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 1804568 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

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