RNA id: TCONS_00019103


Basic Information

Item Value
RNA id TCONS_00019103
length 340
lncRNA type read_through
GC content 0.41
exon number 3
gene id XLOC_008896
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 869961 ~ 909037 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAGTTTACAGGCTTTGGAGAAACATTCTACAGCAACTATAACAGACATAAAACCATCAGAGTTATGGAAGTCAGAAACACTGTCAATACCAATACGGGATCAGAGTCATCGTGGAATGAGTAATGGAATGAGTTTACCACCAGGCAAACATCTGGGTGTCTTTGACATGGCACAGACTGAGCAGTGACATGAGGATGAAGATTGTGTTTGTGATTGATAATGTCATAACTTTGCTCTACCGGGGAGTTTCCTGGACAAGTGAAGTGAGTGAAGAGGTAATATAATAAGACTGTGGATGGATTGTAGGTAGAAATTGGCAAAGCCCATGAAGCATTGTAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019102 lncRNA downstream 21169 837015 ~ 848792 (-) True XLOC_008895
TCONS_00019101 lncRNA downstream 21499 818191 ~ 848462 (-) True XLOC_008894
TCONS_00019100 lncRNA downstream 54942 813096 ~ 815019 (-) True XLOC_008893
TCONS_00019099 lncRNA downstream 142219 725416 ~ 727742 (-) False XLOC_008890
TCONS_00019098 lncRNA downstream 236553 622709 ~ 633408 (-) True XLOC_008885
TCONS_00019107 lncRNA upstream 77107 986144 ~ 993389 (-) False XLOC_008902
TCONS_00019108 lncRNA upstream 77107 986144 ~ 993540 (-) False XLOC_008902
TCONS_00019109 lncRNA upstream 77107 986144 ~ 993587 (-) True XLOC_008902
TCONS_00019110 lncRNA upstream 98563 1007600 ~ 1008359 (-) True XLOC_008903
TCONS_00019111 lncRNA upstream 231408 1140445 ~ 1143069 (-) True XLOC_008908
TCONS_00017579 mRNA downstream 89462 765760 ~ 780499 (-) False XLOC_008890
TCONS_00017569 mRNA downstream 89489 722475 ~ 780472 (-) False XLOC_008890
TCONS_00017576 mRNA downstream 103946 749230 ~ 766015 (-) False XLOC_008890
TCONS_00017568 mRNA downstream 107639 722475 ~ 762322 (-) False XLOC_008890
TCONS_00017578 mRNA downstream 107642 758188 ~ 762319 (-) False XLOC_008890
TCONS_00017580 mRNA upstream 4761 913798 ~ 917274 (-) False XLOC_008890
TCONS_00017581 mRNA upstream 11261 920298 ~ 923981 (-) True XLOC_008900
TCONS_00017582 mRNA upstream 16163 925200 ~ 931848 (-) False XLOC_008890
TCONS_00017583 mRNA upstream 17488 926525 ~ 931815 (-) False XLOC_008890
TCONS_00017584 mRNA upstream 17491 926528 ~ 931815 (-) False XLOC_008890
TCONS_00017537 other downstream 444205 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 520394 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 412753 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 925934 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1356932 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 1715991 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 1827346 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

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