RNA id: TCONS_00019104


Basic Information

Item Value
RNA id TCONS_00019104
length 490
lncRNA type read_through
GC content 0.38
exon number 2
gene id XLOC_008897
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 875328 ~ 875985 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCCTagcaaaactctttccacaatgtTGGCAATTGaatggcttttctccagtgtgcatCCTCACATGGTCTGTAAGGTGTTGTTTACAAGTGAAACTCTTTTCACAATGTTGGCAATTGaatggcttttctccagtgtgaatcctcatatggAATGTAAGGTTTTGTTTCCAAGTGAAACTTTTTTCACACTTTTGGCAAGTGTAAAGCTTTTCTCCATTATGAATCTTCATATGCTCTTTTAAGTTTTCGCTCCgattaaaactctttccacattgcTGGCAAGTgtaaggcttttctccagtgtgaatcctcatatggaatgtaaggttttgtttccaagtgaaactttttccacactgGTGGCAAGTATTAGATTCGGCTGTTGTTTGTGATGAGGTTTTTGTCTGTTCTGATTTTTCTCCAGAACTGAAATCCAGACATTCCTCATGCTGATCCTTCTCTTCTACTTCATTCTGATCTTGACTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019102 lncRNA downstream 26536 837015 ~ 848792 (-) True XLOC_008895
TCONS_00019101 lncRNA downstream 26866 818191 ~ 848462 (-) True XLOC_008894
TCONS_00019100 lncRNA downstream 60309 813096 ~ 815019 (-) True XLOC_008893
TCONS_00019099 lncRNA downstream 147586 725416 ~ 727742 (-) False XLOC_008890
TCONS_00019098 lncRNA downstream 241920 622709 ~ 633408 (-) True XLOC_008885
TCONS_00019105 lncRNA upstream 1219 877204 ~ 908307 (-) True XLOC_008898
TCONS_00019106 lncRNA upstream 23104 899089 ~ 900879 (-) True XLOC_008899
TCONS_00019107 lncRNA upstream 110159 986144 ~ 993389 (-) False XLOC_008902
TCONS_00019108 lncRNA upstream 110159 986144 ~ 993540 (-) False XLOC_008902
TCONS_00019109 lncRNA upstream 110159 986144 ~ 993587 (-) True XLOC_008902
TCONS_00017579 mRNA downstream 94829 765760 ~ 780499 (-) False XLOC_008890
TCONS_00017569 mRNA downstream 94856 722475 ~ 780472 (-) False XLOC_008890
TCONS_00017576 mRNA downstream 109313 749230 ~ 766015 (-) False XLOC_008890
TCONS_00017568 mRNA downstream 113006 722475 ~ 762322 (-) False XLOC_008890
TCONS_00017578 mRNA downstream 113009 758188 ~ 762319 (-) False XLOC_008890
TCONS_00017580 mRNA upstream 37813 913798 ~ 917274 (-) False XLOC_008890
TCONS_00017581 mRNA upstream 44313 920298 ~ 923981 (-) True XLOC_008900
TCONS_00017582 mRNA upstream 49215 925200 ~ 931848 (-) False XLOC_008890
TCONS_00017583 mRNA upstream 50540 926525 ~ 931815 (-) False XLOC_008890
TCONS_00017584 mRNA upstream 50543 926528 ~ 931815 (-) False XLOC_008890
TCONS_00017537 other downstream 449572 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 525761 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 445805 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 958986 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1389984 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 1749043 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 1860398 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

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