RNA id: TU348720


Basic Information

Item Value
RNA id TU348720
length 706
lncRNA type intronic
GC content 0.37
exon number 1
gene id G306905
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 5158137 ~ 5158842 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTAGATCTATGGCATTATATTTAGATCGTGGCATGAAAGGTTGCAGTGATGAAGATTGTAGCTGATCACAGACATGTTGTTGAGCACATCAATGCAGTGATCTCGTCATTGCAATTCAGTTTCTGCACACTAAAGAATGCTTTCATCATAACTAACAGTGAAAACACGATGTAACTAAGAGATTCGTTGAATAAAACGGGAGTTTTAGCGTGAGTCCAGAACTCAGTCACTGATAAACTCGTGCTGTTTGATTGACAGCTCTAGCGATTGTAAAGGGAGCGTTTTTTGATCGCTTTCTTTATATAATTTAATCACCATTTAAATAACAGATTATTTTCATCCTACTAAGAGAAACAATGTGACCGTCTGGTCACTGGTTTGATTTACTGACACACAGACAAAGAACATCTGACTGTACATGAATTATTACATATCAGATCAGGCATTAGAATTAACACAGTTACTTACATGTTGTTGCATTACTGTCGAGTCCATGTCGTAAATGTCTGTTTGCAAAGCCTGCGCCGAAATGCCATTACCAAAGAATCCACAGTGAAATGTACCGAATACAAATAAATAAAGCTCAGCTGAGACATTGTTGAAAATAAATAACCATACTCCTAGCATTAGGATCCTTTGAAAGGTAATGTTATTTTAGTCCTGGATCGCTCTTCTCTCCTCCTCATCTCACTAACACACCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU348689 lncRNA downstream 197299 4960558 ~ 4960838 (-) True G306878
TU348577 lncRNA downstream 392035 4764299 ~ 4766102 (-) True G306780
TU348548 lncRNA downstream 413503 4743846 ~ 4744634 (-) True G306752
TU348581 lncRNA downstream 436315 4721585 ~ 4721822 (-) True G306782
TU348573 lncRNA downstream 445999 4711839 ~ 4712138 (-) True G306777
CI01000092_05043766_05046720.mRNA mRNA downstream 111417 5043486 ~ 5046720 (-) True CI01000092_05043766_05046720
CI01000092_05003845_05017069.mRNA mRNA downstream 140729 5003804 ~ 5017408 (-) True CI01000092_05003845_05017069
CI01000092_04997617_05000398.mRNA mRNA downstream 157465 4997332 ~ 5000672 (-) True CI01000092_04997617_05000398
CI01000092_04873079_04899153.mRNA mRNA downstream 258984 4872851 ~ 4899153 (-) True CI01000092_04873079_04899153
CI01000092_04838658_04840626.mRNA mRNA downstream 317511 4838208 ~ 4840626 (-) True CI01000092_04838658_04840626
CI01000092_05233177_05241886.mRNA mRNA upstream 74151 5232993 ~ 5242071 (-) True CI01000092_05233177_05241886
CI01000092_05245643_05246756.mRNA mRNA upstream 86801 5245643 ~ 5247648 (-) True CI01000092_05245643_05246756
CI01000092_05264533_05281413.mRNA mRNA upstream 105675 5264517 ~ 5281413 (-) True CI01000092_05264533_05281413
CI01000092_05290594_05293542.mRNA mRNA upstream 131557 5290399 ~ 5293545 (-) True CI01000092_05290594_05293542
CI01000092_05318541_05319602.mRNA mRNA upstream 159652 5318494 ~ 5319606 (-) True CI01000092_05318541_05319602
TU348717 other downstream 4004 5153668 ~ 5154133 (-) True G306902
TU348596 other downstream 292164 4804395 ~ 4865973 (-) True G306792
TU348466 other downstream 652184 4496414 ~ 4505953 (-) True G306679
TU347691 other downstream 1478649 3677874 ~ 3679488 (-) True G306014
TU347441 other downstream 2433193 2724594 ~ 2724944 (-) True G305772

Expression Profile