RNA id: TU349320


Basic Information

Item Value
RNA id TU349320
length 584
lncRNA type sense_over
GC content 0.39
exon number 3
gene id CI01000093_00044285_00045637
representative True

Chromosome Information

Item Value
chromosome id CI01000093
NCBI id null
chromosome length 1475560
location 44014 ~ 45719 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCAAGAATGTATTTTGGTAAAAGGTGTAACCAAGGTATATAAAGAATCATGTTCCTCTGTGTGACCAGACCAGTTTTCATCATGAAGACGCTAGTGTGTGCTTTCATTGTGGTGCTCCTCTGCAGTGCATCAGTGCACTCGCTGACATGCTACACCTGTGTGGATGGGGACTGCAAGACCCCAACTGAATGCCCCACCTCAAGCAATTTCTGCAAAACGGTTTCAACACCAACTGTGTTCTCCCGGACATGTGAGGAGTTCTGTGTGCCTGGAGTGAACGTCTACTGCTGCACTTCTGATCTGTGTGACTGATCTCTAAATGTCACCAATCTAGTTGATCTACTGTCCTTGAGTCAGGCACTAATGTTCATTGTAATAGCATAGTAGCACTGGGTTACTGTAGGTGTATGCTTTATTTGAAATCCACTGTTTAAGTTTTTTTTTTTTTCTTTTCTTTTTTTTTTTTCAAATTCTTTTTCCATCTGACTCAAACATGGATTGTTTTACATATCACTGCTTAAAGGAATTTCTAATTAGTGTGATTTCTGTCCCAGTATGATTTGATTTATAAATTAAATAAATC

Function

GO: NA

KEGG:

id description
K06846 LY6D_E_F_G6_H; lymphocyte antigen 6 complex locus protein D/E/F/G6/H

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU349323 lncRNA downstream 28709 13323 ~ 15305 (-) True G307432
TU349341 lncRNA upstream 17331 63050 ~ 63306 (-) True G307449
TU349381 lncRNA upstream 85585 131304 ~ 131571 (-) True G307486
TU349382 lncRNA upstream 85869 131588 ~ 131815 (-) True G307487
TU349383 lncRNA upstream 86212 131931 ~ 132275 (-) True G307488
TU349385 lncRNA upstream 89711 135430 ~ 135668 (-) True G307490
CI01000093_00021721_00029528.mRNA mRNA downstream 14486 21721 ~ 29528 (-) True CI01000093_00021721_00029528
CI01000093_00000644_00001222.mRNA mRNA downstream 42792 469 ~ 1222 (-) True CI01000093_00000644_00001222
CI01000093_00224221_00233968.mRNA mRNA upstream 178146 223865 ~ 236442 (-) True CI01000093_00224221_00233968
CI01000093_00372074_00372877.mRNA mRNA upstream 326076 371795 ~ 373025 (-) True CI01000093_00372074_00372877
CI01000093_00441786_00443029.mRNA mRNA upstream 395649 441368 ~ 443590 (-) True CI01000093_00441786_00443029
CI01000093_00601248_00607534.mRNA mRNA upstream 555366 601085 ~ 607729 (-) True CI01000093_00601248_00607534
CI01000093_00633602_00642455.mRNA mRNA upstream 585907 631626 ~ 642522 (-) True CI01000093_00633602_00642455
TU349703 other upstream 1022300 1073022 ~ 1073753 (-) True G307751

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018313 True 710 mRNA 0.40 3 NC_007126.7 29595719 ~ 29598679 (-)