RNA id: TCONS_00019109


Basic Information

Item Value
RNA id TCONS_00019109
length 1975
lncRNA type read_through
GC content 0.40
exon number 2
gene id XLOC_008902
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 986144 ~ 993587 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttcatattaataatattacagaaattattttaagaacggaataaatataaatttacacatttaGTCTGCAGAAAACTGCCCGTCCCAACTTATTTTGGAATGTGTcacaggtctgaatgacaggaaaggatatatatgatcaaatgaaatgaagttgaccaaacaacacaacaaaatatTTGTGTTCTTATGGTTTGCAATGAAAATAACTTTTCCATATTGTCCCAACCTTTTCTAGTTTGGAGTCGTAGTACTACATGAATATATGCACTTTGAAAGATGATACCATGCTGTCTAATCATgcaatttttctttatttctttatccCCCCACATTATACGCAACAGTAGAAACTTCATTAAACTTCCCATCCAAACCTTTAACTTCAATGTCTGTACAGAATATATTCAATAGCCCAAAATACACATATAGCATAGGTTTATCACCATCCCTCTTTACATTGTCTGAATCAGTTCCTCCAATGAAAGCCAAGAAGGGCTGCCAGGTTTATATTTACATCCCAGTAGAGCCTCTGATTGCATAGCTGTGTCTGTTACCATATACAATATCATCAGTCCCCAAGAAAACCAAAGATCAACAAGTTCATTTCTAAATAATTAGGGAAGTATTTCCACACTAAACAATGCAATAAACGAGAACAGATCTACGAACTCTCTAAATACCTCAGAGATGACCTCTAGAGTGTTTAAGCAGAAGGTGAAGACTTGGAGATCTCCTGAACAAATGCAGTGGAATGGTGACTAATAACTAATCACCAGTGTGGATGTAACATCTAAGCTTACAGTTTTTTGTTGTGAAGTCTCGTGTATATTGAGTCTTCCTTCTTGAGTGAAAGTCTTTTCACATTGAGAGCATGAGTGAGACTtatctccagtgtgaatcttcaCGTGTCTGATAAAGGATCCTTGATGTATAAAAGTCCGCATTCGGCGCACGGGTGGGATTAGTTAGTGTGAGTTTTCATGTGCTTGGTGAAGCGTTCTAGTGAAGAGAAACTCCTTCCACAGGGAGAGCACGAGTGAGGCTTATCTCCggtgtgaatcttcatgtgtcTGATAAGAGACGATCGGAGTGTAAAAGTCTTTGCACACTCTGAGCACTGAAAGGATTGCTTGTTAGACTGAATATTCCTGTGCTTGCTGAGGCTTCCTAGTGAAGGGAAACTCTTTCCAGGTTGAGAGCTTGAGTGAGGCTTCTTGTCGTCGTGAGTTTCCATGTGCTTCCAAACACTTTGTTGGCTTttaaaactcctcccacactgagagCACGAATAACACTTCTTGTTGGTGTAAGTTTTCATGTGTATCCTAACACTTCTTTGGCTTTTGAAACTCTTTCCGCATTGTGAGCATGAGTAGGGCCTCTCGTTGCTGTGACTTATCATGTGCATATTGAGGTGTGTTTGCTGaataaaactctttccacatatGGAGCACGAgtaaggtttctctccggtgtgaatcctcatgtgatttttaaagttttttctaCTTAAACGCTTTCCACACAGTTCGCAGACACGGGTTTTCATTTCAGGGTGAGTTTTGACATGGGCTTTGAGTTTTTTGCTAGTATTGAAACACGTTCCACAGTATTGACAGGCGTAAGGCTTCTCTCTAGGATGCATCCTTCTCAAATGGAGTTCAAAACATCTGCCATTTCTGAAACCTTTCCCACAGTACTGGCAGGTGAAAGGCTTGATTCCAGAGTGAATGCTTAAATGGGTATGAAAACGAGCTTCGgttgtaaaactctttccacactgaaggCAAGTGTAGGGCATCGCTCTGCTGTGGATATTCATGTGTGCATCAAGAGACTCTTTAAGTTCAAAGCGCTCTCCACACTCTGAGCAAATGTGAGAATTATCTTCAATGTGAGTTTCAAGGCCTACTTGGTGATCGAATTTCATGCTCTTTTCATCGTCCTCCAATTTCATCACAATCAGATCTAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019103 lncRNA downstream 77107 869961 ~ 909037 (-) True XLOC_008896
TCONS_00019105 lncRNA downstream 77837 877204 ~ 908307 (-) True XLOC_008898
TCONS_00019106 lncRNA downstream 85265 899089 ~ 900879 (-) True XLOC_008899
TCONS_00019104 lncRNA downstream 110159 875328 ~ 875985 (-) True XLOC_008897
TCONS_00019102 lncRNA downstream 137352 837015 ~ 848792 (-) True XLOC_008895
TCONS_00019110 lncRNA upstream 14013 1007600 ~ 1008359 (-) True XLOC_008903
TCONS_00019111 lncRNA upstream 146858 1140445 ~ 1143069 (-) True XLOC_008908
TCONS_00017602 lncRNA upstream 529885 1523472 ~ 1534219 (-) True XLOC_008912
TCONS_00017604 lncRNA upstream 596226 1589813 ~ 1590795 (-) False XLOC_008914
TCONS_00017607 lncRNA upstream 613262 1606849 ~ 1611693 (-) False XLOC_008915
TCONS_00017586 mRNA downstream 33253 942531 ~ 952891 (-) False XLOC_008901
TCONS_00017588 mRNA downstream 35026 946719 ~ 951118 (-) True XLOC_008901
TCONS_00017587 mRNA downstream 40340 942623 ~ 945804 (-) False XLOC_008901
TCONS_00017582 mRNA downstream 54296 925200 ~ 931848 (-) False XLOC_008890
TCONS_00017583 mRNA downstream 54329 926525 ~ 931815 (-) False XLOC_008890
TCONS_00017589 mRNA upstream 5252 998839 ~ 1003553 (-) True XLOC_008890
TCONS_00017590 mRNA upstream 23850 1017437 ~ 1022436 (-) True XLOC_008904
TCONS_00017591 mRNA upstream 31721 1025308 ~ 1031511 (-) True XLOC_008905
TCONS_00017592 mRNA upstream 39656 1033243 ~ 1036878 (-) False XLOC_008906
TCONS_00017593 mRNA upstream 39657 1033244 ~ 1038193 (-) True XLOC_008906
TCONS_00017537 other downstream 560388 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 636577 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 328203 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 841384 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1272382 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 1631441 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 1742796 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

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