Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00017590 |
| length | 1085 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 3 |
| gene id | XLOC_008904 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 1017437 ~ 1022436 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-131120-161 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. |
| ensembl_id | ENSDART00000156003 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00019110 | lncRNA | downstream | 9078 | 1007600 ~ 1008359 (-) | True | XLOC_008903 |
| TCONS_00019109 | lncRNA | downstream | 23850 | 986144 ~ 993587 (-) | True | XLOC_008902 |
| TCONS_00019108 | lncRNA | downstream | 23897 | 986144 ~ 993540 (-) | False | XLOC_008902 |
| TCONS_00019107 | lncRNA | downstream | 24048 | 986144 ~ 993389 (-) | False | XLOC_008902 |
| TCONS_00019105 | lncRNA | downstream | 109130 | 877204 ~ 908307 (-) | True | XLOC_008898 |
| TCONS_00019111 | lncRNA | upstream | 118009 | 1140445 ~ 1143069 (-) | True | XLOC_008908 |
| TCONS_00017602 | lncRNA | upstream | 501036 | 1523472 ~ 1534219 (-) | True | XLOC_008912 |
| TCONS_00017604 | lncRNA | upstream | 567377 | 1589813 ~ 1590795 (-) | False | XLOC_008914 |
| TCONS_00017607 | lncRNA | upstream | 584413 | 1606849 ~ 1611693 (-) | False | XLOC_008915 |
| TCONS_00017613 | lncRNA | upstream | 699151 | 1721587 ~ 1725484 (-) | False | XLOC_008918 |
| TCONS_00017589 | mRNA | downstream | 13884 | 998839 ~ 1003553 (-) | True | XLOC_008890 |
| TCONS_00017585 | mRNA | downstream | 16260 | 926638 ~ 1001177 (-) | False | XLOC_008890 |
| TCONS_00017586 | mRNA | downstream | 64546 | 942531 ~ 952891 (-) | False | XLOC_008901 |
| TCONS_00017588 | mRNA | downstream | 66319 | 946719 ~ 951118 (-) | True | XLOC_008901 |
| TCONS_00017587 | mRNA | downstream | 71633 | 942623 ~ 945804 (-) | False | XLOC_008901 |
| TCONS_00017591 | mRNA | upstream | 2872 | 1025308 ~ 1031511 (-) | True | XLOC_008905 |
| TCONS_00017592 | mRNA | upstream | 10807 | 1033243 ~ 1036878 (-) | False | XLOC_008906 |
| TCONS_00017593 | mRNA | upstream | 10808 | 1033244 ~ 1038193 (-) | True | XLOC_008906 |
| TCONS_00017594 | mRNA | upstream | 22938 | 1045374 ~ 1066269 (-) | True | XLOC_008907 |
| TCONS_00017595 | mRNA | upstream | 157440 | 1179876 ~ 1197408 (-) | False | XLOC_008909 |
| TCONS_00017537 | other | downstream | 591681 | 425695 ~ 425756 (-) | True | XLOC_008873 |
| TCONS_00017535 | other | downstream | 667870 | 349451 ~ 349567 (-) | True | XLOC_008870 |
| TCONS_00017597 | other | upstream | 299354 | 1321790 ~ 1321906 (-) | True | XLOC_008910 |
| TCONS_00017627 | other | upstream | 812535 | 1834971 ~ 1837883 (-) | True | XLOC_008922 |
| TCONS_00017639 | other | upstream | 1243533 | 2265969 ~ 2266083 (-) | True | XLOC_008927 |
| TCONS_00017647 | other | upstream | 1602592 | 2625028 ~ 2625663 (-) | True | XLOC_008933 |
| TCONS_00017655 | other | upstream | 1713947 | 2736383 ~ 2736498 (-) | True | XLOC_008940 |
