RNA id: TCONS_00017592


Basic Information

Item Value
RNA id TCONS_00017592
length 1147
RNA type mRNA
GC content 0.47
exon number 2
gene id XLOC_008906
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1033243 ~ 1038193 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCCTCACAGAATCCGATTTCCCCAGTGGCATCATGACCTCTGTGTAGATAAATAGCATCCATCCGCACGGACGGCCAAGACATTTCAAGATGACCAAAGTCACCAAGCTTCATTCCGAAGACATCAGGGCCATGAGGTCTGCGGGGAAGTCCACTCAGGAAATAAATCGCTATCTGAAGTCTGTCGGCGTAAACACCACGCTCAGCACCATCAGAAGACATTACAGAGAACGCATAATTCACAAACGCAACCCTCGCAAAATGAAGCAGGACATTGTTGCAGCCATAGACCAAATGATGAGCCAAAACCAAAAAACAACGGTAAGCTCGGTGAAAAAACATATCTGGCGTGACAATGGAGTGAGCGTCAGTGAGCGAAGCATCCGCAGAATCAAGCAAAAACTTGGTTGGAGATACAAGAAAAACCTACTTCGTCCAACGATCGCAGACACGGATAAAGAAGCACGTCTCCAACTAGCTCAGAAATGGATCGACGAAAAGGAAATGTTTCACGACGTCATTTTCTCAGATGAAATTACGCTGACTTTGGATCACTTTTCCTCCGTTTGTAAAACAGAAAGACGAGAGTTCGAGCCCAAGAGGAAGCGTTGCGTGAAAGTTCATGTCTGGGCAGCCATTTCCAGACTCGGACCAGGACCTATCGTCATCTTTGACAGGATATTGGACAGGACTTTCTTTGAAGACACGATCATAAGAGAAACCGCAGCACCGTACATCAGGGAAAACTTTGGTGTTCATCACCGATTTATCCAGGATAACGACCCCAAGCACACGGCTGCAGGAAAGGTGATCGCCGCGGAGGACATTAACTGGGTGAAGACCCCAGCAGAGTCCCCTGATCTAAACCCGATTGAGATGGTGTGGCATGAGCTGAAGGAGTACCTCCGGATAGAAGCTCAACCGACCATCAAGACTGAGTTAACGGCTGCCATTCACAAGTTCTGGTTTGAGGAACTGACTGAAGCCAAATGCAACAAGTACATTAATCGGCTGCTTGAGGTTCTTCCAGCCGTGGTCAAGAATCAGGGAGGATACACGGGGATGTAGCTGAAACTGCAGGGTCATGACACAACggaaaaataaagatttacattttttaaataatagtaaacGCTTTGAGatcac

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5102 No description available

Ensembl:

ensembl_id ENSDART00000123844

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019110 lncRNA downstream 24884 1007600 ~ 1008359 (-) True XLOC_008903
TCONS_00019109 lncRNA downstream 39656 986144 ~ 993587 (-) True XLOC_008902
TCONS_00019108 lncRNA downstream 39703 986144 ~ 993540 (-) False XLOC_008902
TCONS_00019107 lncRNA downstream 39854 986144 ~ 993389 (-) False XLOC_008902
TCONS_00019106 lncRNA downstream 132364 899089 ~ 900879 (-) True XLOC_008899
TCONS_00019111 lncRNA upstream 103567 1140445 ~ 1143069 (-) True XLOC_008908
TCONS_00017602 lncRNA upstream 486594 1523472 ~ 1534219 (-) True XLOC_008912
TCONS_00017604 lncRNA upstream 552935 1589813 ~ 1590795 (-) False XLOC_008914
TCONS_00017607 lncRNA upstream 569971 1606849 ~ 1611693 (-) False XLOC_008915
TCONS_00017613 lncRNA upstream 684709 1721587 ~ 1725484 (-) False XLOC_008918
TCONS_00017591 mRNA downstream 1732 1025308 ~ 1031511 (-) True XLOC_008905
TCONS_00017590 mRNA downstream 10807 1017437 ~ 1022436 (-) True XLOC_008904
TCONS_00017589 mRNA downstream 29690 998839 ~ 1003553 (-) True XLOC_008890
TCONS_00017586 mRNA downstream 80352 942531 ~ 952891 (-) False XLOC_008901
TCONS_00017594 mRNA upstream 8496 1045374 ~ 1066269 (-) True XLOC_008907
TCONS_00017595 mRNA upstream 142998 1179876 ~ 1197408 (-) False XLOC_008909
TCONS_00017596 mRNA upstream 144545 1181423 ~ 1198886 (-) True XLOC_008909
TCONS_00017598 mRNA upstream 415956 1452834 ~ 1484795 (-) False XLOC_008911
TCONS_00017599 mRNA upstream 416658 1453536 ~ 1485086 (-) True XLOC_008911
TCONS_00017537 other downstream 607487 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 683676 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 284912 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 798093 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1229091 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 1588150 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 1699505 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

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